AMCG00021563


Basic Information

Item Value
gene id AMCG00021563
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21269203 ~ 21291092 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021563
GAGAGAGCGAAGTCGCAGCAGATCCGGACAGCCAACACCATCCGACGGACCTCCTCCCTGGACACGATCACGGGGCCCTACCTCACCGGACAGTGGCCCCGGGACCCCCACGTGCACTACCCCTCCTGCATGAAAGACAAATCCACGCAGACTCCCGGTCGTTGGACAGAAGAAGGAACCGAAAAGCGATGCACGCACCAGCGCTCAGCGTCCTGGGGAAGTGCTGACCAGCTGAAGGAGcAGATTGCAAAGCTTCGGCAGCAGCTTCAGCGCAGCAAGCAGGGCAGCCGGCACAGCAAAGACAAGGAGCACCATTCGCTGCTGCACGGGAACCACGCGGCCACCGGCAGCCAGACGCAGGCGGCTGTTTCCAGATCGGTCCCGATGCCATTGACAAACATTCCAGTGCCAAAGTCTGCGATCTCCAGGGTGCCCAGCAGCATGGAGGGCATCAACCACGAGCTTGAGAAGGTCTTCATCCGAGACGGCGGAGAGAAAGACGAACTCAAGcccctgGACGTCCCGGACGGCCGGCGCGCTCCGTTCCCCCCACAGCACCGCAGCAGCAGCACGCGCAGCATCGACACGCAGACTCCCTCGGTGCCGGAGCGCAGTagcagctgcagcagccacTCGCCCTCGCCCTTCTGCCCCCCCGGCTCTCAGGACGGCAGCCCCTGCTCTGCAGAGGACCTCCTCTACGACCGGGACAAAGACAGTGGCAGTAGCTCTCCTCTGCCTAAGTTTGCCTCCTCGCCCAAACCAAACAACAGCTACATGTTCAAACGCGAGCCCCCGGAGGGATGCGAGAGGGTCAAGGTGTTTGAGGAGATGGCCTCTCGTCAGTCCAGCTCAGTCCCACTGTTTTCGTGTCCCGACAAAAACAAGGTAAACTTCATCCCCACCGGCTCCGCGTTCTGCCCCGTCCGCCTGCCCGGCGCATCGCTGTCCATGTCGCCCCCCAGTGGCCCGGACCCCGCGGCAGACAACGGCGCCGCCTCGAGCACCGCGCCGGCTGAGCTGCCCCCCCCTCAGGTGTCCGTGTCCGTCTCCGTCAGCACCAGCACAGAAGACCCTGACGAGGCCGCTGAGCTGAGCCCCCTTCAGGACCCGGCGCCGGACGAGCACGCACCGCCCCCCCAATACGCGGTGCTT

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021563 True 1155 mRNA 0.65 7 21269203 21291092

Neighbor

gene id symbol gene type direction distance location
AMCG00021556 NA coding upstream 74601 21192962 ~ 21194602 (+)
AMCG00021555 NA coding upstream 76446 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 188518 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 288578 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 328995 20929804 ~ 20940208 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 69076 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 282958 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 366450 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 523878 21814970 ~ 21828220 (+)
AMCG00021571 NA coding downstream 541731 21832823 ~ 21834923 (+)
G86859 NA non-coding upstream 31040 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 93544 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 230778 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 366348 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 566746 20699214 ~ 20702457 (+)
G86884 NA non-coding downstream 4439 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 224941 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 347184 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1012474 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 1296122 22587214 ~ 22588925 (+)
AMCG00021560 NA other upstream 12014 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 33123 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 36350 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 103703 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 159835 21098419 ~ 21109368 (+)
AMCG00021591 NA other downstream 979779 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1406072 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2883311 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2892116 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3618792 24909884 ~ 24949100 (+)

Expression


Co-expression Network