AMCG00021568


Basic Information

Item Value
gene id AMCG00021568
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21674291 ~ 21761907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021568
ATGGGCAAAGCCCAggatattgaaaagaaaaaagccagaGACCTCAAAGCCACCTATGAGTTTCCTGAGAGGTGGGCTCAGAAATCAAGGGCCAGAGTGCGTAAGAGCTTGATGCCAGACATGACACAGAACAGAAATCTTCTCCTGCTACCAACCTCGGGCCCTGGCTTGTGTCCTGTTGTGCTGATCTCCCAGCAGGTCAGGCAGCATCACAAGGACCTTGCTAATCAAATGCGTATTGAAGGGGTCGCTGAGATGAAGATGCCAGAGACAAACCTGGACCTACTCAAAACCTTCAGCGGCATCAATGTGCCCCAGTGTGAAAATCTGTGTGTGACAGATCTAGCAAAAGTGACCGACCTTGTTTCTCGTTCAACACCTGCTGATGCTCCATTCCTGTTCAATTGGCCGCCATCGAGCACTCCAACAAAGGAACTGGTTCAGACCAGTAGACTCGTGGGCTGTGGAGCAGTCCGTTCCATTGAGGGAGAGAGCAGTCAACGTGTCGACCTTGCTGGACCCTGGGGCAGATGTATGGGCAGTGAGTGCGGCCCAGGGGGCAGTCAGAGCAGGGCCGTGTGGTGCGCCCATATAGAAGGCTGGACCACATTACACACAAACTGCATACAGACCGAGAGGCCGGACAACCAGCAGAGCTGCTTCCGGGTCTGTGACTGGCACAAGGAGCTGTACGACTGGCAGCTGGGCGACTGGAACCAGTGCCTGCCAGTGGCGCTGAGGAACTCTGGATCGTACAAATCCCCCGTGTGCACGAAGGGGGAAGAGGGCATCCAAACCAGGGAGGTGGCCTGCGTCCTGAAGGCCAACGGCTCCCCCGCGCAGGACGTCATCTGCGAATATTTCGAACCCAAGCCCCGTCTGGAGCAGGCCTGCCTGATCCCCTGCCCCCAGGACTGCGTCGTCTCTGAGTTCTCCCCCTGGTCCTTGTGCTCCCGGAGCTGCGGCGAGGGTCTGCAGCACCGGCTCCGCAGCGTCCTGGCGCCGCCACTCTTCGGGGGCTCGACCTGCCAGAACCTGACCGAGTTCCAGTCCTGCCAGCTGGACCCCTGCGAGGCGGAGGAGAGCATGTACAGCCTGAAGGTGGGCCCCTGGAGCGCCTGCTCGCTCCCCCACTCCCGACAGGCCCGGCAGGCAGGGAAGCGCAGGAAGAACAAAGGCCGGGAAAAGGGCGTGAAGGACCCGGAGACCAGGGAGCTGATCAAGAAGAAGAGGAACCGCAACCGGCAGAACCGGCAGGAGAGCAAGTTCTGGGACCTGCAGGTGGGCTACCAGACGCGCCAGGTGGTCTGCACACACAAGAACGGGAAGCAGGCTGCCCTGAAtCTTTGCACACAAGAGAAGCTTCCCGTCACCTTCCAGTCCTGCATAATAACTAAAGATTGTGAGGTGACTGAGTGGTCTGAATGGGGCACCTGCTCCAAAGACTGCTACGACCTGAACTCTCCGAAAGGTGTCCGTGTCCGGACGAGAAGTGTGACCCAGTTCCCTGTGGGCGGGGGGGCAGAGTGTCTGGTCCTGGAAGAGCAGGAACCTTGTGCCCCCCAGGGGGACGGCATCCCGCCCTGCGCCTCGTATGGATGGAGGACAACTGAGTGGAGTGAGTGCCGGGTCGACACGTTACTGAGTCAGCAGGACCGCAGGCGGGGGAACCAGACTGGCCTCTGTGGGGGAGGGGTGCAGAACCGGGAGATTTACTGCGTCCAGGCTAATGAAGACCTGCTCTCCTACCTCAACACGCTCAAAGACAAGGAAGCATCCCGCCCTGTTGATAATAAACTGTGTGGGGGCCCGGTACCCAACACCACGCAGCTGTGCCACATCACCTGCCCTGTGGAGTGCGAAGTGTCGTCCTGGTCAGCATGGGGGCCGTGTACGTTTGAAAACTGCGAAGAccaaCTACGGAAAAGACGGATTATAAATGAGCCTACGGGAGGAACAGGAAACTGCCCTCATCTCACAGAGGCCATCCCTTGCGATGACCCCACGTGTTACGATTGGCAGCTGTCCAAGCTGGGCACGTGTGTCCCCGACAACGAGAACGAATGTGGACCTGGGACTCAAATCCCAGATGTGAAATGCATCAACGGTGACGGAGgggagatagacagacagatgtgcCGAGATGCCATCTACCCCACGCCCGTCGTCTGCGAGGTGCCTTGCCCAAAAGACTGCGTCCTCAGCCCCTGGTCCACATGGTCTTCCTGCTCCCACACCTGCTCAGGCAAAACCACAGAAGGCAAGCAGATGCGGGCGCGCTGCAACGACCACCCCTGCACCGTATACCACTGGCAGACCGGGACCTGGGGCCAGTGCATCGAGGACACGTCCGTCTCCACCATCAACTCCTCGTCCAGCTGGAGCGGAGAGCCCTCCTGCGCCGTAGGCATGCAGACCCGGAAGGTCATGTGCGTCCGGGTCAACGTGGGACAGGTGCCGCCCAAGAAatGTCCAGAGAGTCTTCGCCCCGAGGCCGTCAGACCTTGCCTACTGCCGTGCAAGAAGGACTGTATTGTCACTCCGTACAGCGACTGGACGCCCTGCCCCTCGACCTGCCAGCCAGGTGGTAATTCAAAAAAGAAACAGTCACGCTACAGGATTATTATCCAGTTACCGGCCAATGGGGGCCAGGACTGTCCTGAGGTTCTGTACGAAGAGAAAGAGTGTGAAGCCCCATCTATGTGTTTCGGCTACAGGTGGAAGACCCATAAGTGGCGGCGTTGTCAGCTAGTGCCGTGGTACGTGCGTCAGGACAGTCCTGGGGCCCACGAGACCTGCGGACCGGGCCTCCAGACCAGAGCCATATCATGCCGCAAGCAAGACGGAGGGCAAGCTGACATCGGCGACTGCCTCAAGTACGCCAGCACCATGCCCGGTATCACCCAGTCCTGCCAACTGCCCTGCCAGGACGACTGTCAGTTCACCAACTGGTCGAATAGCTCCTATTATAAGAGTAAACGCAACGTTCTACTTCTCTACATTGCAGGGAAAAGCAAGAAGAGGGACAAGTGCAAAAACACCCAAATATACCCCCTGAGTGAGACCCAGTACTGCCCCTGTGACAAGTACAATGCCCAGCCTGTGGGGAACTGGTCCGACTGCATCCTGCCAGAGGGGAAGGTGGAGGGGATCTTGGGAATGAGAGTCCAGGGGGACATTAAGGAGTGTGGCCAGGGGTACCGCTACCAGGCCATGGTCTGCTACGACCAGAACAGCCGGCTGGTGGAGACATCTCGCTGTAACAGCCACGGCTACATTGAGGAGGCCTGCATCATCCCTTGCCCTTCGGACTGTAAACTCAGCGAGTGGTCCAACTGGTCTCGCTGCAGTAAGTCGTGTGGGAGTGGCGTCAAGGTCCGGTCAAAATGGCTCCGTGAGAAACCGTACAACGGGGGACGGCCCTGCCCAAAACTCGACCACGTAAACCAGgTGTATGAGGTGGTGCCGTGCCTCAGTGACTGCGGTCAGTATGTGTGGGTCGCCGAACCCTGGAGCGTGTGGAAAGTGAGCGGCGTGGATCTGAAGGAGAACTGTGGAGAGGGAGTCCAAACAAGAAAAGTCAGGTGTATGCAGAACACTATCGATGGCCCCTCTGAGCCAGTGGAGGATTACCTCTGCGACCCCGAGGAGATGCCCCTGGGCGCCAGAGAGAGCAAGCTGCCGTGTCCTGAAGACTGTGTCCTCTCAGACTGGGGGTCCTGGAGTCGGTGTTTGCTGCCCTGCAATGGGAACAGCACGCGAGAGAGATCCGCCTTCCCCATCCGACTGGCCAGCGCGGGGAAGGACTGTCCCGTCTCCACAGAGAACGAGTCCTGCGCCCTGAACAAGAACTGCTTCCACTACACGTACAATATCACAGATTGGAGCACTTGTCAGCTGAGTGAGAAAGCTGTCTGCGGAAATGGGTACAAGACCAGGATGCTGGACTGCGTGCGGAGCGACGGCAAGTCTGTGGACCTCAAGTACTGCGAAGAGCTCAAGTTGGAGAAGAATCTGCAAATGAACACGTCCTGCGTCGTCGAGTGCCCCGTGAACTGCCAGCTGTCCGACTGGTCGTCCTGGTCCGAGTGCTCCCAGACCTGCGGACTGGTCGggaaAATGTGGAGAACCCGGGCTGTGATCCAGGGCTCCCAGGGGGACGGCCGGCCCTGTCCCTCACAGATGGAGCAGTGGAAGCCGTGTCCAGTCAAGCCCTGCTACAGATGGCAGTATAGCTGGTGGTCCGAGTGCCGAGTAGAGGACGCTCAGTGCGGGGATGGGCTGCGGTTCAGGAACATCTCGTGCTTCGTGTATGATGGGTCGCCGAAGGACCAGGGCAGCGTGGTGGACGAGGAGCTCTGCGGGGACCTGGAGCCATCTGTGGATGGAGACAAACTGATCATGCTGGAGGAGAGCTGCACGGTGCCCTGCCCAGGCGATTGCTATTTGACGGAGTGGACGGCCTGGAGTCCTTGCCAGCTCACCTGCGTCAACGGAGAGGACCTGGGCTTCGGGTCCGTGCAGGTCCGGTCCCGCGCTGTCATCCAGCAAGAGCAGGAGAACCAGCAGGAGTGTCCGGAGCAAGTGTGGGAGTCCCGGCCGTGCACCGAGGGGGAGTGCTATGAATATAAATGGATGACTGGCGCCTGGAGAGGATCGTCTCGCCTGGTGTGGTGCCAGCGTTCGGACGGATTAAACGTCACAGGTGGATGTCTCCTTGCCAGTCAGCCAGTGTCCGATAGGTCCTGTGACCCACCCTGCAATAAGCCTCAGTCCTATTGCACCGAGGTCGTCTATGAAGTatcagacacagagaggaacaCTGGGCACAATCATCACCTTTCCAATCGAGCAGAATTCAATTCTCAAGCTGATATCAAACATCGTTCTCCCGGCTGCCAGCTGGCTCCCGAGATTTCCCCCATTCTCCACTGA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0043534 blood vessel endothelial cell migration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021568 True 4935 mRNA 0.59 27 21674291 21761907

Neighbor

gene id symbol gene type direction distance location
AMCG00021564 ica1,LOC107592479 coding downstream 363392 21295597 ~ 21310899 (-)
AMCG00021558 NA coding downstream 433200 21239074 ~ 21241091 (-)
AMCG00021559 LOC105891776 coding downstream 436827 21232931 ~ 21237464 (-)
AMCG00021562 NA coding downstream 446484 21207696 ~ 21227807 (-)
AMCG00021557 NA coding downstream 468346 21195595 ~ 21205945 (-)
AMCG00021572 NA coding upstream 74116 21836023 ~ 21855452 (-)
AMCG00021577 NA coding upstream 209382 21971289 ~ 21992069 (-)
AMCG00021576 dgkb coding upstream 239772 22001679 ~ 22012233 (-)
AMCG00021580 LOC107586980 coding upstream 259078 22020985 ~ 22026204 (-)
AMCG00021578 NA coding upstream 272953 22034860 ~ 22063539 (-)
G86893 NA non-coding downstream 158057 21516032 ~ 21516234 (-)
G86881 NA non-coding downstream 380388 21291373 ~ 21293903 (-)
G86850 NA non-coding downstream 483359 21189839 ~ 21190932 (-)
G86849 NA non-coding downstream 485453 21186768 ~ 21188838 (-)
G86848 NA non-coding downstream 489973 21175706 ~ 21184318 (-)
G86925 NA non-coding upstream 22969 21784876 ~ 21785134 (-)
G86997 NA non-coding upstream 368899 22130806 ~ 22188140 (-)
G87092 NA non-coding upstream 866692 22628599 ~ 22628891 (-)
G87116 NA non-coding upstream 928701 22690608 ~ 22690889 (-)
G87181 NA non-coding upstream 1245487 23007394 ~ 23014782 (-)
AMCG00021569 NA other downstream 2976 21666402 ~ 21671315 (-)
G86808 NA other downstream 590721 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 949411 20721884 ~ 20724880 (-)
G86649 NA other downstream 1276508 20395612 ~ 20397783 (-)
G86640 NA other downstream 1314036 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 1393280 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 1567418 23329325 ~ 23332968 (-)
G87263 NA other upstream 1576344 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 1733118 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 2437629 24199536 ~ 24210205 (-)

Expression


Co-expression Network