AMCG00021570 (tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314)


Basic Information

Item Value
gene id AMCG00021570
gene name tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21814970 ~ 21828220 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021570
GGACAGAACACATTCAAATGATCGCTGTGGTTTTGTAATGGTATAGATTTTGCCAAGAGTTATAGCTCGAGATTATTTAATTCTAGTCATTTAGTCGGGAATTATGTACTACTTTCATTCTGGGTTATTACAAGTAGTAATTGAATCAAACCcggaaggcagagagagagagattttattatttttttatttatgagcCCTACAAGGTGTACCTTACCGCTGTAATATAAACCATTTTTAATGACTCAATGGCCCTCAAATCACCCAGAATGGCTGCTCATTTTACTAAGACTGCTCAATAAACTGTAACCTAACAGTTTACCTAATGCTTCAATATCCCAATATCAGATTACATCATGATCATCaatatgttaattacatttacaaacaggggcaggaagaaaacacacacataactgAGGGTAAACCACACAACGCCATTGTGAAACTGTTGTTTAGTACATTTCAACAAAAACGAGATTCTATTAATGTAATGGTTTCACATTTGCACAGTTTTGCAGTTGTCCATGGGGAGTCCCACCCATCCCCCCCTGCCGGCGGTGGTGGTCCCACTGTGGCACTCAGAGGAACCatttcttgatttaaaatgcaaattgcacAGACAAGTTGAATGGGGGTCACAGCTGTCACCGCTCCGCTCACGTGTCGTCCTGtttttagtttttggtcAATAGTCACGTGCAAGAAAAAAGAGTTGCATGTGGTAACTGTGGAGGCATACAGTGATTGGGGGAGCATCGAGTCCTGGGGAGATCTGGGAAGACTCATCGTTGGAAATAGGCCGACGGCTGACGTCATGGCTCAATCTCTAAGCGGCGCTGCGGAGAAGTGCGCATGTCACTGGGGCTGGATGGAGAGGTAAACAAGCATCCCATGATCAGAAAAGGCTCCTGAAAACACGCACAAGAAAAGCTGCAACGATGGGGAAGTCTTTCTCTCACCTGCCGATGCACGGCACTAAGGATGAGTGCCACGATGGCCTCACATCCACCCCGGACATCTCGGACCGCAACGGCCTGATCCACACCGACTCGCACGGCGAAGACGGGAAACATGGCGACGTGTCTCAGTTCCCGTACGTTGAGTTCACAGGGAGAGACAGCGTCACATGCCCCACGTGCCAGGGCACGGGCAGAATACCGAGAGGTCAGGAAAATCAGCTCGTCGCGTTGATTCCTTACAGTGACCAGAGACTGAGACCTAGGAGGACAAAGCTGTACGTCACGGCCTCGGTGCTGGTCTGTCTGCTGCTGTCGGGACTCGCCGTGTTCTTCCTGTTCCCCCGCTCCATCGACGTCTCCTATGTGGGGGTCAAGTCCGTCTACGTCACTTACGACCAAGCGAAGCGTATCGTGTTCCTCAATGTCACGAACACCCTGAATATCACCAACAACAACTATTACTCGGTGGAGGTGGCCAACATCAGCGCACAAGTCCAGTTCTCCAAAACCGTGATCGGAAAATCCAGGATGAACAATATCACGTCCATCGGACCGCTTGACATGAAGCAGATTGACTACATGGTACCAACGGTAATAGCAGACGAGATGAGTTACATGTAtgACTATTGCACATTGCAGACTATCAAAGTTCACAGCATTGTAGTCATGATGCAAGTGACCGTCACAACGGCGTACTTCGGGCACACTGAGCAGGTGTCTCAGGAACGGTACCAGTACGTGGACTGCGGACGCAACACCACTTACCTGCCCGGCCACTCCGAGGTCTTAAACGTTCTGCCGCCCCCAGCCTAAACCCCAACcgccggggggtggggggggtgctttTATCCAGGGGGGACATTTGCCTAATCTGCTTGGGCCCACAGACGTGTTCCTGCTTTGTTTGTACTTGAAGATAGCCTAGCTGGTTTCACTCTGTTCTTTCCTTAGTTTTACGAAAAGagaaatatgcaaacaaaaaatctttttaatgttatacagttctgtgttttagatggccatttaaaatgccactgtataattatcattttaggcataacttaaaaaacaaaaaaaatcctcctAAGCTGTGCCCCATTACtgacctttatttatttcttatttaaaagaaatgaaaggcaCTTTATGAAGTGATTGTTGACCAGCGTATTCTATATGCAGTAAAACACTGATTGCGTTGTaccctaaacaaaacaaacaaaacaaaaagctgtttttCCTGTCAGGACCACTTGTTTATGCACTGACTCTAACCGCTCTTTCAAAGACCTTCAGTTACAAACCATCTCTCATTAACCCTTAAAGATATTATGTCTCCCGTTCCAAGAATCATTTAGGATTCAGgtgatttattaatatgtagATCTGCTCGTCAGAAGTGGGACGTGTTCGGCTTGTCGGAGTCTCTCACCGATACTTATCAGATTCAGCCTAGATGcatatcataatcataatgtCATCAAGGGGAACGCTGCAGTAGTTCCCAGTGTACAAAACCTCCCAGGTTCACTTCCGCGTCCactgtcattgtgttttttaataggCACCCTGGCTGCAAGAATACAGCTTCTCTTTATCTCTGCCTGTCGATTGAAGGTGCTGGAAGTGTCTGAATGACCGGGATCATGCTCCTGTCTGTCCGTCTAGTTCGCCACATACAGAACTTCCTGACTCGACTCTCTGGCGCTTGTCCGTGACTTCACTGTTCCGTTCGTGTTGCAACTTGAGCGTTTCGTTTAGAAAGGTGTGTTGTCTTCTTCTTCAGAGGTGTCCAGCTTTCATCTTGCTGAGGACACGCCCGGTCAGATACGTGAAATAAGGCATTGTTTTGATCATTAAATGAAACCGGAAGTTGACCTGGGGAGTTTGGTACGCTGGGAGCTGttgtatgaattaaaaaatgtaaaagcgtGTTAAGATGCCTGGAGAAAAGTTTGCCATAAGaactttaaaatggaaacatgttttaatttgtattttggtgTCTCGTTATGGTGTTATTTTCTGATACTTGATTCAGTGAGCTTTCTCTGCTAAATGTGCTTTAGAGAGGCTTAATTGtacttgatttaattaaagactGAACTGCTATTCCTCCTGTTGGGTCCATCAGCAGAGGCCTGAGTTCACGGTCTGGAGCTGTTTAGACTTGCTTCAGTAATGCTGAATTTTATAACCTGAAAGAGGTCCAAGCTGCCGCACACAGTGTAATCATTGTGTTTGTGAACAGCTTGAACAGAATAAATGTAACAACATGCATTTCCcatgtgctgttgttgttgaataTAACTTCAGATCGCAGAGATGATGAggtgtaattataattacagaaaGACCTGCGTCTCGCTTGAACACAGAGTCAGTCCAAGTCTGTGTGTAATGTGTTCGCCACatgtttatctgttttttttattttcttgcccTTGGCAGTTCAGTGAAttacaacaaacaagaaagggTACTTGAAGGGActgtagaaataaaatcaatctgaGGTGCAGTTCACTATCAGTCATGTATGTTAGTTCTTTTTCTTGTCAGTTTCATGCTTTCATTTTCTACTGTTTATGCTGTGTATTCCAGTTGTGAGGaaaatcagatttttattttagttttaaattaaatttgcgaaaattgtgaaaaaaagagtatgttgttcttattatttttaatttgtgtttaatagatgctgctgtaataataacaaacaaatctatattaaCATTCCCCAAGGATTGTGTAATTGGGTACCTAATATTGCAGAAATGAAAGTGGTGTAGGACCCAATACTCGGAAACATCTCGAGGGTTGTTACCGAACACTTTTGCACTTTAGTACTTCAAATTACTGTACAACACTTGGGTTCATAAGCTGTGGTGTCAGTGGCATTCATTCTGTTAATGTCTTTCACAGGGTTTAACTAATTTTATTGTATAGCCAATCCTTTTCTTATACTGTTAAAGTTGTGCAGTACGAAACCATTATGTATGCTTTTCACAGTGTTTGCGAAAATGTGCTTCTTGTGCGTAGTGATGTCAGGAATCAATATAATCTTCAGTAACCCGTTAACACTCGGGTTAACACTCGAATTGTGGATACTAACCTGCTGCAGAGCCGGGAGATCACTGCCAATCATGCACCATCTGCATCTGATTGAACTTTGCATGGTTATCTCACCATTCTGGAGACAATGTAACAATAAACAACATTCAGAACATCTGGAATCATATTGTTGTAAAACTGGTACATTTCgctttattgtattatagtcCATGTGGAAAAAACAAGACATGTACAGTGTGCTGGTGCAACGAAATAAATGTATCAGTGGGCAGATATCGAGCAATCTTACACGTGTACAATGTTTCAGTAACTTGTGAACAACTTTTCTAAAGAAgtaatatttttatatctgactttcaaaacaaattcatGAAGTCTAAACTGCATGTCTTGTATTGGCATCCCCAGAACACATGCaacttttaatttgtgttaaatgtgtatCCTTTGCCGGTTATATACATGAATTCAGTGAAGTGTAATCATTCATTATTTCCCAGACTGCTAGGCAACAGTAAAGAGAGCAGATGCCctcttttttccagttttgtgtATCTCTCACGAATTAAACCTGATCTGGCAGTACAGATGTGGGAGAAAACCACTTCCACACTCCCCTTGTAAAATAGAGGTCCCACTtttgaataatacattgtttgaatgtgttATAGTGCCCGTTGTAGTCTGCAAccaactgtatatataatccAGCGTCACAGTTTGATAATGTCATGGTTGTTTTAGAAGTAagttctattttattattttaaaaaacttttATATTCTAGATATTCCACCgaacattgtttcttttcaaattggATACCAGGCCTCGAAAACTTATTTAGAAGACACATTATGTAGCGGCTGAATAGAAGCTTTAGAATTGTGTCTTATTCGAAATTCATATCATAGGATACTGGAAATTGTACTGTTGAGATATATATCAAATTAGTTTCCATTGGTGAGGGATTGATTTCGTTTTGAGTGATTCAGATTGCTGGGGCAGTGTTGTAATGATCTTGTCTGGGGGTTGAATCTAATAAAAGGTTTTCAGATGAGCTGAAGATACCAAACATTTTGCAAAGTGTCTGATGTATGGAATTCAGAACAGATTGTGTTTGTCAACGTTGAGGAACAATCATTTCTAGGCTCTCAGATCACCAATCAAATTACAATCTGAATAGGTTTCCTCCAATGAACAGCCCTACTGGGGGAATATACTGAGGACTGTTTTTCTACTTTCTACAAAACAATGTCCTGGACTAAATCTAGCCGAGTCAGGATTGTAAAGTTAACAACGTAGTGGTTTTGcattatacttgtttttttccgccagcatgaaaaaaaaaaataaacctgcttatttcattttttttgtcattcctgttttatttttttcaataatggCAGAAGGCACTCGCAGTGAAGCAGATTTGTTTGGGAGATTcctgacaatatttttatattcattcgttagcctttttatttttttgtttttttgtgcattCCCACATTTACCTAACACTTATAGAAGGTAAACAACTGCTTATTAGATTTAGAAGTGGTTGAAAAAACCTCTCTAGGCTTGCTGTGTTCAGGGCTTTCTGTTGACAAGGCTGTGAGAAGTCTAGATATGTCTAAGCATGGATGAAATGGCCCCCACGGGGAAAACCAGCAGTGCACCAGCAGCGTTGACAAAAAGGCTTTCGATGCCTTTCGATGGCTGCACCATCAAGTCGATCAAGAGTTGCAAGGATATCTGATTTAACAAATCCCATCTAGGATTTGTCAGATTGCCTCCGCTGGCTTCTTTGTGCTGTTAATGTATTTGCTTAAGCTGATTGTTCTCGCAAAAATGATCAACCactaaacagaaaatgtgtgcaaTTGTTGGTGGCCACACAAGGGGGCGTCTGGGtgcaggtttgttttttgtttgtttctttgtattgtcttgcttgtttttgtatttctgtagtTCAGCTCAGTACACATAATGATTTGTGTAAATGCATAGTTTATAGAAAAAAggcctattttttatttaatttgtgtgtgtgtatggggagAATGTAGAAGATGTATTTGAagaaattacacttttattaaacacactgtgacaattagtgtctgtgtttgtatacatttagaAATGAATCCCCAATCattgtaaaatgaataaatacaaatagaacaAGGCTACCCtaagtaaataaagaaactaaGTATGCAATCATAACAGAGCAGTTGACTTGAGCTAATCACGGTTATTTGTAACTAGGGCTTGTTGATTTCATCAGATGTTTGCATTGAAGTGTGGAGAAGTGAGTGACAAGATGAAAAGGGGCTGAGTTTCTTTGTCCTCCAAGAATGTAGGAAGTGAAATCGGTGGGAACGGCAGCTTGTAGGGTTATCTGAGATGTGTGTCTTAAGTGGAAGCATGTGTCTCAATCAGTCAATCGCGCCCACATGTTCCCTGTTGTTGAGAAGGTGGTGAAAATGTTATATTCCACAGACAGCTGGGGAAACAAACTGGCCATTTCGGATTTTATACATTAATACTTCAATGCCTGGTTTTGTTTGATTATCTGAGAAATCATACATTTcctcaaataaaatgaaaaaatcttTTAACA

Function

symbol description
tmem106b Enables ATPase binding activity. Involved in dendrite morphogenesis and lysosome localization. Located in endosome and lysosomal membrane. Implicated in hypomyelinating leukodystrophy.

NR:

description
PREDICTED: transmembrane protein 106B

GO: NA

KEGG:

id description
K25048 TMEM106B; transmembrane protein 106B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021570 True 6685 mRNA 0.41 10 21814970 21828220

Neighbor

gene id symbol gene type direction distance location
AMCG00021567 NA coding upstream 155097 21657542 ~ 21659873 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding upstream 209907 21574050 ~ 21605063 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding upstream 453368 21360168 ~ 21361602 (+)
AMCG00021563 NA coding upstream 523878 21269203 ~ 21291092 (+)
AMCG00021556 NA coding upstream 620368 21192962 ~ 21194602 (+)
AMCG00021571 NA coding downstream 4603 21832823 ~ 21834923 (+)
AMCG00021573 NA coding downstream 42433 21870653 ~ 21872068 (+)
AMCG00021574 NA coding downstream 49936 21878156 ~ 21897029 (+)
AMCG00021575 arl4a,LOC103358889,LOC104928894 coding downstream 71676 21899896 ~ 21902053 (+)
AMCG00021585 NA coding downstream 407758 22235978 ~ 22237376 (+)
G86905 NA non-coding upstream 176454 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 298727 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 517190 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 576807 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 639311 21172090 ~ 21175659 (+)
G87030 agr2 non-coding downstream 475346 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 758994 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 800400 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 1179174 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 1316784 23145004 ~ 23191753 (+)
AMCG00021560 NA other upstream 557781 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 578890 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 582117 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 649470 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 705602 21098419 ~ 21109368 (+)
AMCG00021591 NA other downstream 442651 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 868944 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2346183 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2354988 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3081664 24909884 ~ 24949100 (+)

Expression


Co-expression Network