AMCG00021586 (sostdc1)


Basic Information

Item Value
gene id AMCG00021586
gene name sostdc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22228224 ~ 22231184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021586
CGCGTATAAAAGTCAAGGTGAAGGCATCGCAGCAGCTCCTGTGCAAGAAGCAGCTCAGCATCGCTTGTGCACCGcagtgtttctctctccctctctctatgtGCATCTCTCCTGCAAAGCCGCAGCCATGCTCCTGAACCCCGGTGAATGCCACATCTTGTTTCTAGGGTGCATCCTCATGAGGAGCTGCCTGGCTTTCAAAAACGATGCCACGGAGATCCTTTATTCACACGTGGTTGATCCTGTGCAAGAAACCCCCAGTAATACATCGTTAAATCAAGCAAGGAATGGAGGGAGAAACGGGGGCAATGCTGGATCTGCCCGCAATGATCGAGGTCAGGTTGGTTGCAGAGAACTGCGATCCACCAAGTACATCTCGGACGGCCAATGCACCAGTATCAACCCCGTGAAGGAGCTGGTGTGTGCCGGGGAGTGCCTGCCAGCCCAGATGCTGCCCAATTGGATTGGCGGGGGCTACGGCAGAAAGTACTGGAGTCGCAGAAACGCACAGGAGTGGCGCTGCGTGAACGACAAGACTCGCACCCAGCGCATCCAGCTCCAGTGCCAAGATGGAAGCGCAAGAACGTACAAAATCACGGTCGTCACCTCCTGCAAGTGCAAGAGGTACTCCCGGCAGCACAATGAGTCCAGTCACAAATCTGAAGGAGTGTCCCCACCAAAGCCTGTCCAAAATCATAAAGCCAAGAGAAGACAAGGCAAGAACAGCAAGCACAGCGTGAACTGGCATGAACTGGAAGCCAAGAACTAAATGGACACTGTGGTTtggatttgtacattttccctACAAATACTGGAATGACTTTGAGACCCATTGTGTGTGGACAGCTGACAGTGTGTACATCTGACACCGAGAGTTATTAAGCTGCAGTCTTTgattgaaagcttttttttattattggctGATAAGTTTACAAATAGCATGCTTCTCTGTGGGACGTAAGATCAAACACTACCTGAATCAACTCGTATAATCAGAACATGCTCTTAAATCTTTGAATGACAGGTTCTTACAGTGCAATGTAACCAGCATAGAGAGATCATTTTAAAACCGGTTCAACTCAAACACAGCCTTATCAGAAGCCTTCAGTtcacaaaatgtgtattgtcTGCATgacaatgtcaatgtcaatgctTTTATAATAATCTGTTCTTGATTTTCAGCATTACTGCACAGTGATACAACTTACGAAGTATGCAGCTCTCTGAACTGTATAAAAGACTATTGTTTGAGGTTATCAACCACTTTTCATTGCAACCTTGTTCTTAGTCACTTGTTTTAGCCATGCACAAATCTTCAATCTTTGTTTACAGGAAAATTATATATCTTTATAAATCgtgtcattatcattatcatgtTGGAAGCCATTGTATTATGAAAAAATGCCTAAATGAGGGAAGTAggagaaaaaatacacattacacataaAAGCTATCTAATGGTTTGATATAGTACAAAGTATTTGTTGTtgaaattatgaaatgaaatgctgtatatattgtaatatatatttgtatgataATGCCTTTGATagattttgtaatgtttctttttgtaatatattaattcaatgtAATCTTCAAATACAGATGTTGAAGACAACACAGTACTggtggtatttttaaaatacactgatcagAAATGATGTGATGTACAGACTAACTTtgtacttttgttgttgtttgataaTTCTGCAATGTCACATGTTCTGCATTAATAAATAGTGCAAATTAACTATGGA

Function

symbol description
sostdc1 Enables BMP binding activity and BMP receptor activity. Involved in negative regulation of determination of dorsal identity; negative regulation of myoblast differentiation; and negative regulation of signal transduction. Located in extracellular space.

NR:

description
PREDICTED: sclerostin domain-containing protein 1 isoform X1

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021586 True 1760 mRNA 0.42 2 22228224 22231184

Neighbor

gene id symbol gene type direction distance location
AMCG00021587 NA coding downstream 1482 22201102 ~ 22226742 (-)
AMCG00021581 NA coding downstream 74791 22135784 ~ 22153433 (-)
AMCG00021582 NA coding downstream 96107 22127477 ~ 22132117 (-)
AMCG00021583 NA coding downstream 113550 22107007 ~ 22114674 (-)
AMCG00021579 dgkb,LOC103388989,LOC106582257 coding downstream 161651 22063544 ~ 22066573 (-)
AMCG00021589 NA coding upstream 9516 22240700 ~ 22241688 (-)
AMCG00021588 ankmy2,LOC102794045 coding upstream 11045 22242229 ~ 22246802 (-)
AMCG00021592 agr2 coding upstream 72460 22303644 ~ 22306427 (-)
AMCG00021594 snx13 coding upstream 183080 22414264 ~ 22436882 (-)
AMCG00021600 twist1 coding upstream 356149 22587333 ~ 22588802 (-)
G86997 NA non-coding downstream 40084 22130806 ~ 22188140 (-)
G86925 NA non-coding downstream 443090 21784876 ~ 21785134 (-)
G86893 NA non-coding downstream 711990 21516032 ~ 21516234 (-)
G86881 NA non-coding downstream 934321 21291373 ~ 21293903 (-)
G86850 NA non-coding downstream 1037292 21189839 ~ 21190932 (-)
G87092 NA non-coding upstream 397415 22628599 ~ 22628891 (-)
G87116 NA non-coding upstream 459424 22690608 ~ 22690889 (-)
G87181 NA non-coding upstream 776210 23007394 ~ 23014782 (-)
G87193 NA non-coding upstream 844450 23075634 ~ 23076015 (-)
G87203 NA non-coding upstream 858418 23089602 ~ 23091111 (-)
AMCG00021569 NA other downstream 556909 21666402 ~ 21671315 (-)
G86808 NA other downstream 1144654 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 1503344 20721884 ~ 20724880 (-)
G86649 NA other downstream 1830441 20395612 ~ 20397783 (-)
G86640 NA other downstream 1867969 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 924003 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 1098141 23329325 ~ 23332968 (-)
G87263 NA other upstream 1107067 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 1263841 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1968352 24199536 ~ 24210205 (-)

Expression


Co-expression Network