AMCG00021590 (tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755)


Basic Information

Item Value
gene id AMCG00021590
gene name tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22293764 ~ 22301168 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021590
GTTCTCGGTGCTCTGCCTCGAGTCGGCGGCTCAGTGCCAGTGCAGGCGTGAGGACGGCCGGCGTGCATGCAGTAGGCTGAGCATCTGGAAAGATTACTGTAATCAAGACAGTGAGTTAATTGATTGCACGGGCGTGTGGGATCGACAGATCAGCGACCATGGTGTGCGGCGGGTTCACCTGCTCGAAGAACTCCCTCTGCGCCCTCAACATCCTGTACGTGATGGTGAGCTTACTGATGATTGGGATTGCGGCCTGGGGGAAGTGGTTTGGCCTGGTCTCAAGTTTCCAGGTGGTTGGAGGAGTCATAGGAGTCGGGATCTTTCTCTTCTTTGTGGCCCTTGTTGGTTTGATTGGTGCCATGAAACATCAtcaagtgttgttgttttttTACATGATCATTCTCTTCATGGTGTTCGTGGTTCAGTTTTCAGTGTCTTGCGCTTGCCTTGCACTTAATAAAGAACAGCAGGATCACCTCTTAGAAGTAGGGTGGAACAATTCTCAAATCACACAAATGGATGTCGAAAAAAGTCTGAATTGCTGTGGGTTTTCAACTTTCAACAATAACCAGACCTGTTCTGCTCtctgctttcaaaacaattccTGCCCGACTTGTGCATCTAAAATCCAGGAGCATGCAGGCGAGGTGCTGAGATTCGTTGGGGGGATCGGCCTGTTCTTCAGTTTCACTGAGattttgggAGTGTGGCTCACATATAGGTACAGGAATCAGAAGGATCCGCGAGCAAACCCGAGCgcttttctgtgatttaaaaaagattGCTTGCGAAAAAGAATGCACTACgtgattttaaagacatttggATATTTTCAGTATCTCAACGAATTAACTCTGTAAAGGGACATGATCTCCTTTTCCCCCCTGGATCGGGCTATTTTTACCTTCACCATCATATGGAGACTTGACCGGTCCTTGctggaaaaatatgaaatctgcTGAATATTTGTGAACACACTGCTGTCCAGTACTCTACTGTCTTATTGTGTTCTTTGGGGCCGATTGCATGACATTATATTAGACTATTCTAATGCAAGTTAGTTGCACAAAAATGAAGACTAAGACTTATGCTAaaaagttagcctcctcaccTCTGGGCTATCTTAGAATTAAAGTCTATATTTCCATTAAAACTGCTTGCCTGAGAATACAGCGACACTGTCAATGATGTTGATGGGCGGAGCCTCCCATTGGCTTACACACACTCCGCCCACCGACAGTCCCCCAGACAGAAACTCCTCCCCAAAGAGTTCAATTACCAATCCTGGGGTCCGTTTCAGTTCTGAGGGCAGTCCTCCTCCAGTACGCgaatgtttcctcttaaatatttattttagcagattattttattgtttctgctTGTCTGTTACGGACCGCACACGCAGCTGGTTGACTCTGTTAacttgtgtttgagtgtgttaaatttccccccaaaatatatttttctgcattgtaTTCCAGTAACATGCACAGATTTTCAGTGAACTGGGATCCTTGCTGTTTTAGAGAAACATCTaccatattttttctttttttttcttcaagtgtcttaaaattcccagaatgccttGAGTGATTGACTAAGACCAGTCTAGAAggactgttttatgcaacagtTTTAACTGAGTGTCGATCGTTAATATGACTTTGTTTATGCAACCAGCCCCTGGATCTTTATTCCTATGTACATCCTTTTTCATGAGTTTCAGTATTCCTGATGATGATGGTGTGAAATGCAGGAtgttgtctctgtgtctctccaaagaaagctgtattttattgatgAGTCTGCAAATACTCTTCTACATCTAGACATATTTATTACttgaatgtataatttgttcAGAATGCGGTGTTGTGATTTCAACTTAAGCATAAAACAGCCCACTAGGGCAAATAATTGATtcataattgattttaatatgtatgttttatcttGCTGTTTGGctaatataatgcataatgtgACCACTACAATGAAGGCAGAAGTATAATGATTTGCATGTTGGCTTTAAAGGTCTGCCAGTATAGAGAATACTAAGTAATTGTCGATGTGCAATAATAAATGAAGGAAAACTACGTGCTATTTAAATGAAGTGACTACATTGAGAAGAACTTTAAACACATGAAAGCTGTTTTGTTAGCTGATGCTGAACTAACAGATCtgttttttctatatttacattttcagatatatacatacacacacacaaacaggctatatattcaaaaagcaaaaatatcaCGTTCGGTGTGGCAAGTCTTAATTTATACcttgaatacaaatgttttgtgGGTTTTTTACAGCTCTTTCTATTGCTCAGTGTTTTTCGTTACAGTCAGTGCTGTGTAAATATGGCAACGGTAAATTGTATGTGAAGTGCTTTTGCAGGTGCATACATTACAGTAATCACCCTTCtcaaaaataatttgaacaacGGTAGTATTAAGAAGTATATGGTTCCGTAAATGAAGACATATCTGTACATTTGGATCTGTGTTTATACTTGATTTCGAAACCCTTTGTAATATCCTCAGTATTTTTACTTCTAGATTTTGATCTGTAACTGCAGGGTGCATATGTCACCTTTTAACACCTAGTCTAAGACTGAATGTGTGCTTGACTCTCTTTATGCATGACCTCTACGAAGTGTGTGTTAGACTAAAGGATTCTGTGAATGCTGTCTCTGTGATTGAGCATTTGTAAACCTAATAAAATTATTTGATACGTT

Function

symbol description
tspan13 Predicted to enable calcium channel regulator activity. Predicted to act upstream of or within regulation of calcium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: tetraspanin-13

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021590 True 2752 mRNA 0.40 6 22293764 22301168

Neighbor

gene id symbol gene type direction distance location
AMCG00021584 bzw2,LOC107702135 coding upstream 28574 22248251 ~ 22265190 (+)
AMCG00021585 NA coding upstream 56388 22235978 ~ 22237376 (+)
AMCG00021575 arl4a,LOC103358889,LOC104928894 coding upstream 391711 21899896 ~ 21902053 (+)
AMCG00021574 NA coding upstream 396735 21878156 ~ 21897029 (+)
AMCG00021573 NA coding upstream 421696 21870653 ~ 21872068 (+)
AMCG00021593 NA coding downstream 79082 22380250 ~ 22390591 (+)
AMCG00021595 NA coding downstream 202977 22504145 ~ 22526873 (+)
AMCG00021596 NA coding downstream 239754 22540922 ~ 22575847 (+)
AMCG00021604 NA coding downstream 531867 22833035 ~ 22839518 (+)
AMCG00021605 NA coding downstream 541624 22842792 ~ 22900445 (+)
G86905 NA non-coding upstream 655248 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 777521 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 995984 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 1055601 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 1118105 21172090 ~ 21175659 (+)
G87030 agr2 non-coding downstream 2398 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 286046 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 327452 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 706226 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 843836 23145004 ~ 23191753 (+)
AMCG00021591 NA other upstream 2623 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1036575 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1057684 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1060911 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 1128264 21158624 ~ 21165500 (+)
AMCG00021602 NA other downstream 395996 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 1873235 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1882040 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 2608716 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2975608 25276776 ~ 25372339 (+)

Expression


Co-expression Network