AMCG00021592 (agr2)


Basic Information

Item Value
gene id AMCG00021592
gene name agr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22303644 ~ 22306427 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021592
AAACTATAATCATGGCAAAAGGCTTGTGTTCTGTGGTTGTGGTATTGGTGGCCATCTCCTCATGTTTTGGAAAACCTGATAAAGCTGTGAGTCAAAAACCCAAGAAACTTCCACAGACTCTGTCCAGAGGATGGGGTGATGAGCTAACTTGGGTCCAGACTTACGAGGAAGCTTTGTTCAGATCCAAATCAAACAACAAACCCCTGATGGTCATCCATCACCTGGAAGATTGTCCACACAGTCTTGctctgaaaaaagcattttctacCAACAAGGAAATTCAGAAGTTGGCCGATGAGGACTTCATCCTGATTAACCTCGTGTATGAAACTACAGATAAGCATCTGTCTCCCGATGGTCAGTATGTGCCCAGAGTTATTTTTGTAGATCCCTCTCTGACAGTCAGGGCTGACATCACTGGGAGATATGCAAACCGCCTGTACGCTTACGAGCCCTCAGACATCGACCTGTTGCATAGCAACATGATTAAAGCCAAGAAGCTGCTGAAGACCGAACTGTAAAAAGCGAAGAAAGACGTCTGACCTCTGGGAGGTTCCAGGATGTTCTCGCCGAGCCAGGAGCTTAGAGTCAACCAGACACATCCTGGAAAACTACTCTGTTGTAAAGTGAAGCACtggacttgtgtgtgtgtgtgtgtgtgcgtgtttgtgtgttcaaCTGCAATGGAAAATGTTCTGCTTTCATGGATCCTCTTATTCTCAGTTCACCTCTGTTTGGAATGCTGAATGTAACGACTTTCTcatctttttaat

Function

symbol description
agr2 Predicted to enable identical protein binding activity. Acts upstream of or within intestinal epithelial cell differentiation. Predicted to be located in extracellular region. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; hatching gland; integument; olfactory system; and vestibuloauditory system. Orthologous to several human genes including AGR2 (anterior gradient 2, protein disulphide isomerase family member).

NR:

description
Anterior gradient homolog 2 (Xenopus laevis)

GO:

id name namespace
GO:0060575 intestinal epithelial cell differentiation biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K20356 AGR2; anterior gradient protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021592 True 773 mRNA 0.45 7 22303644 22306427

Neighbor

gene id symbol gene type direction distance location
AMCG00021588 ankmy2,LOC102794045 coding downstream 56842 22242229 ~ 22246802 (-)
AMCG00021589 NA coding downstream 61956 22240700 ~ 22241688 (-)
AMCG00021586 sostdc1 coding downstream 72460 22228224 ~ 22231184 (-)
AMCG00021587 NA coding downstream 76902 22201102 ~ 22226742 (-)
AMCG00021581 NA coding downstream 150211 22135784 ~ 22153433 (-)
AMCG00021594 snx13 coding upstream 107837 22414264 ~ 22436882 (-)
AMCG00021600 twist1 coding upstream 280906 22587333 ~ 22588802 (-)
AMCG00021601 ferd3l coding upstream 289203 22595630 ~ 22596109 (-)
AMCG00021598 NA coding upstream 328277 22634704 ~ 22638390 (-)
AMCG00021599 tmem196,LOC107655099,LOC107571147,LOC107755951 coding upstream 337965 22644392 ~ 22649062 (-)
G86997 NA non-coding downstream 115504 22130806 ~ 22188140 (-)
G86925 NA non-coding downstream 518510 21784876 ~ 21785134 (-)
G86893 NA non-coding downstream 787410 21516032 ~ 21516234 (-)
G86881 NA non-coding downstream 1009741 21291373 ~ 21293903 (-)
G86850 NA non-coding downstream 1112712 21189839 ~ 21190932 (-)
G87092 NA non-coding upstream 322172 22628599 ~ 22628891 (-)
G87116 NA non-coding upstream 384181 22690608 ~ 22690889 (-)
G87181 NA non-coding upstream 700967 23007394 ~ 23014782 (-)
G87193 NA non-coding upstream 769207 23075634 ~ 23076015 (-)
G87203 NA non-coding upstream 783175 23089602 ~ 23091111 (-)
AMCG00021569 NA other downstream 632329 21666402 ~ 21671315 (-)
G86808 NA other downstream 1220074 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 1578764 20721884 ~ 20724880 (-)
G86649 NA other downstream 1905861 20395612 ~ 20397783 (-)
G86640 NA other downstream 1943389 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 848760 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 1022898 23329325 ~ 23332968 (-)
G87263 NA other upstream 1031824 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 1188598 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1893109 24199536 ~ 24210205 (-)

Expression


Co-expression Network