AMCG00021602


Basic Information

Item Value
gene id AMCG00021602
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22697164 ~ 22711144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021602
GTTTGCCACTTAAAAACAATTTGCAACTggagtcacttttttttttctctcctccaatGGATTTTCAAAAACAGCTGCTTTTTAACCCTGGCGCTCACTCAATACTATGCACAAGGCCTGGGTGAACCGTGGATGTGACATGCTGGATTCCCTCTCGCTTTAACACTTGAAACCCTTAAGACTTGGTCAGACCGTTTCTCTCCCAAGTGTGCAATCCCAGGCAATGCAAACTCCACCAGAGCAACGCTGTTGACCCCACAGAAGATGATATCATCTGCATTCCTGCTCCCGCCTACACAGCGCGTAGTAAGcacttttattcattaaaattcaGCTGTGGGCAGAACGCGTTGCCATGGCACCGACTGACTCACTGCTGCAAAAGCGGGCGTGAAATGGACGCTTTCGGATTCAAACAAAGGTCTCTGAAGCCAAGAGCATCAAGATGATGTGCGCTCCAATATGCGCCCGTTACGTTACGGAGATATTTGGGGGGTTTTTATATTTAAGGACACACAACAACACCTGCCAGCAGTAGCCCGGGCGAGTAATGGACGTGAGGACACGGGTACCTGTTTTCACTTTCTGATACGTTTCGTGCGCCAGGTTGGACAGAACAAACGAGCCTTGTTTGTTGTGGTTGGACTCTGGTGATTAGCCGCAGCAGAGGAATGCAAATGCGCGGAGGATTAACCGAGCTGAGGCGCTGAACGATGCGAGCGCGGCGCACAATGCAGCCCGTGCAGTCCCGCGCCTGTGCTTTGTTGCAGACCAGGTGTCCTCGCGCTGCCCGGGGATTTCACACGCGCCCGTGAGCGTCCGCCTCGAGCCGCGCCGGGGTGCCTCGCGctcatctctgtctctctgtctctctgtctgtctgtctctctctctctctctctctctctgtctgtctgtctctctctctctctctctctctctctctctctctctctcgctgccGTGCGGCGATGACTCCCTGGCCGCGCAGAGCCCCTCACGCCCTGCAGAAGATGGTCTGTGCGCTATGCTTCACGGTCATGGTCAGCGCCGGGGATGCGGTTGCCGAAAACTGCAGATCATCCTACATAACCAACTGTACAGAGTGTTTGTATCATGGACCAGACTGTGGGTGGTGTTTTCAAGAGGGTTTTCTGGAGGGATCGCCCGTGAATGAAAGATGTGACCTTGTTTCTAAACTAATTAAGAAAGGCTGTCCAATGCATCTGATCGAGCATCCTAGGGTAAAGGTAGAAATCGATGACAATGCATCGAGCACACAGGTGACCCCAGCGGACGTGACTGTGGACTTGCGGCcggGCAGTGAAGCGAGCTTTATTCTACGAGTCGAGCAGCTGCAGAGGTACCCAGTGGACATGTACTATTTAGTGGATGTATCGGCGTCCATGCAGGAGACGTTGGATAAACTGAAGACAGTGGGGATTGCTCTGTCTCAGAGAATGAAGGAGTATTCCAGCGACTTCAGAGTCGGATTTGGGTCCTTTGTGGACAAACCAGTCTCGCCTTACATTAATGTCCACCCTTCAAAAATCGAAAATCCCTGTAGTGATTATGACATACAGTGCAGGCCGGCGCACGGGTTCATCCACGTGCTGTCCCTCACAGAGAACATCACCGAGTTCACCAGGGTAGTGCGGCAGCAGCGAATCTCGGGTAACATGGACACGCCCGAGGGGGGTTTTGATGCCATGCTGCAGGCGGCGGTTTGCAAGGAGCACATAGGCTGGCGTCAGGAGGCCAAACACCTGCTCCTCGTGATGACAGACCAGCCGTCTCATCTGGCTCTCGACAGCAAGCTGGCTGGGATTGTGATTCCACACGATGGCAACTGTCATCTGGAAAATAACCTCTACACCAAAACTGCTACGATGGACCTCATTCCCTTGATGCCAGGTACTTTTGTGGGAAAACTTCTGCCAAAAGCATCAAATCTCAAGGAACTAGTTGTTGAAGCTTACAAGGTTCTCTTCAATATCACAATTGGAATGAGAGAGTGTCACAATGACGGAGGAGAAACTCTCCTGGTAATGAAGCCCATTGGGTTCAATGAAACCACCACAGTGCGAGTGAGGGGCACGTGCTCGTGTCAGTGTTTGGACCCCAGGGAGCCGGCGTCGGGAAGGTGCTTTGGTGAGAGCGGCCCTTGGGACTGTGGAGGCTCACGTCCAGGGCCCTGCCCGTGCGCCGGCGAAGGGAACGAGACCGACGTCACTCCAGACTGCCAGCGAGACGATGCGCAGCCGGCCTGCAGTGGCCGAGGCATCTGTCTGTGCGGGAGATGTGTGTGCGACCGAATCAGCGTCGGAACCGTACACGGACAATACTGCGAGATCGATGACTTCTCTTGCCCCTATCACCGGGGGCTTCTGTGTGGCGGGCGGGGCCAGTGTGTCTTGGGAGAGTGCCGGTGTGCCagcgggtgggggggggagagctGTGCCTGCTCCACGTCCATCGAGCCGTGCTTGGCGTCCGACTCGCAGGTCTGCGGCGGGAGAGGGAAGTGCGTCTGTGGGCGCTGCCAGTGCGACGACCCAAGACGCTCGGGCCAGTTCTGTGAGACGTGTCCCATGTGCAACAGCCCGTGTGAAATGAACTGGAAGTGTGTGCAGTGCCACTTGTCCAATGAGTTTTCTGAAGCTACTCAGTGCAATACAACCTGTTCCCCATTGGTGCATTATGTTGACGAAATCTCTGAGTCAAGACGAGAAACTGCAAAATATTGTCTTTATCCCACTACTGACCGGTGCCATTATAAATTCCAAATGGATTCTGTGTTCGGTGGGAAACAGATCCATATCATCAGATATCCAGAGTGCCTATCTGAGCAGCGCTACTTCCCGACCTTCTTTGCGATTTTCCTTCTCACTGTTTTCCTCGGACTCACAATGACCGTCGTTCTGAAATGCGTTTTGCTCCAAAGGGGACAAAGGCAAAACAAGACCATGGCAGCTGTGTATGACATCACTACTAAGGACATGTCATACTTTCCAACGGCAAACGAGAAGACCATCACCTACAGACGAGACATGTCGGCCGAGATGCACATCACAAAGTGCCTCTGAACGCAGTCTGGGGAAGAGCAGCGGACGATGCGAGCGAAAGGAACAGGGGCCTGATGATTTAAATCTTCTGAGGTTTCACACTGGTAGTTTTCAgttgtattttgtgttctttGTCAGATTAATGATTGTGTGCTTTATCTATAGCAGGCAACGTAGAGAGGTTTCTTTAGCTGCTgttgtgcttttcatttcatttgtgaagAACAATGATCTCCCAGTGCTTTCCAGGCCAGACATCCATCTTCTGTAGAAGCATTCATCATCTAACTGCCTTCATTAATAAGGCAACTAAATACTTAGCTGATTAGCtattcatatatattgtatatatactgtgtgtgcgtgtgtatataaataaggcAAGTTTCTCACCCTGTTCATCCTAGAGTAACGACATGGGACTTATACGTATATGTACACACTAAACATCTTTGAATATGACAGTgggtgtgtatgtataatacacacatttatttattacaaaaaaataataactaactGGATTATTTGAACACTTCCACTCCGAGTGAACCTAACCTTTACAGTAACTCCAATAATCTCAAATAGAAACCCAGTGCTTAAGGGCTGCTAAAGCCTTTTTTTGGCTAAATGGAGGGTGACTATCACTTATTGGGTGCTGAGTCTCAGACTGGCGGGTCGGTAAAAGTTCTGAATTTAATCTGATtcttaatattatattacactTGTTTACACCTAAACGGTACAGATTCTTTAACACTGAAAGTTCCGGAATCCTCAAATCCAATATCACTCCTGTAACCTTTGCCATCAGTCGTTCTAATGCCATAAGTGCGTTGATGTGTAAGtgtacttttttgtgttttatttattctgtcagGTGTGTGTTGGCCACGTGGCTTTCATGTGTGGAGGAAAGGTACTGCTTGCAGTTGTAAGGCCTTTAAGTTTATGTTCTTTCAATTCATATGGTAATGTTAAAGCACACTCCCAGACCGTAGACGTACATTGtagaaaatgttaaatcaaggatgtttccacttcagGTCTGCAAGCATTTGTTCGAAATTCTGATATAGACTAGGTGCCAAAAAcaattgattttaaacattttgtaattccATGTAAATAAATCCAAAGAGATAAACCTGTTAAGAGAAAAAGTCAAGCATTTATTGCCTTTAGCCGTACAAGACTCTTACTGCAGGTGAAGACTAGGCGAGCGCTGGTGTGTGACAGGTGTTCCGCAATGGGGTGACAGAAGCAACCTAATGCTGTCCTCTAGTGGACAAACAAGTTTATCAGAATGGAgttcatgtaaaaaaataactaaccTATACCTTCAAACTCCTTGTAGAATATTAGTTGTGGAAATGGCTGAAATGAATGGTGTGCAGTCACGAATTGCACACGTGTGGTTGCATTGTGCATTACTACTGTCTTGAAACTGGAATGCGTTGCTCCAGAAAACCGAGTCCAGTACATCCCTCTTATtctgatgggggggggggtctctcTAGAAGCACACTACTGTGGGGGCAGTTAATCACGTGCCAGTAACCCCTCTGCGACGCCGGGCACCTGCTGGACTAGGTGTCTCTGCAATAACAAATGTGCTTTCAATGTTGGCGCCCAGTCTTTCTGTTTGCATCCCAGCACTGCGGGAGGGTACCAAGGGGAAAAGGGGCCGATTTAACAGTTTGAGGTGTTGTCCTGTGGGGATGATTggggatgtttttgtttttgtactcgCTGCTAGATTATACTTGTAGTTTTTAACACTAaggtatttatttagaaatgacaatttagttttatttttctaagtcaaacgtatttaatttatatttctagAATATTTAACTGTTagacttttaataaaatgttttatttatctagTTCGAAGAATCAAATTGTTGCCATTAGCTGCTTTATTGTAGTTTCTAATCTACAGATGACACGTGTTTGAAGGAGCATTAAATCATTAACTTTCACAAGTTATCTTTGTTCAGTCATTCAAAGCAATTTCATTGTGGGGCATTAGTCTGTAACAAATGCActgtttttaggtttttctttttctattatCACTGTAAGATTAATGTTCTGTAACTCCTTAGAAAACACTCATTAAAGGCGACGTGTTATTGTGTTTTAGA
>TU108724
GGAAGTGTGTGCAGTGCCACTTGTCCAATGAGTTTTCTGAAGCTACTCAGTGCAATACAACCTGTTCCCCATTGGTGCATTATGTTGACGAAATCTCTGAGTCAAGACGAGAAACTGCAAAATATTGTCTTTATCCCACTACTGACCGGTGCCATTATAAATTCCAAATGGATTCTGTGTTCGGTGGGAAACAGATCCATATCATCAGATATCCAGAGTGCCTATCTGAGCAGCGCTACTTCCCGACCTTCTTTGCGATTTTCCTTCTCACTGTTTTCCTCGGACTCACAATGACCGTCGTTCTGAAATGCGTTTTGCTCCAAAGGGGACAAAGGCAAAACAAGACCATGGCAGCTGTGTATGACATCACTACTAAGGACATGTCATACTTTCCAACGGCAAACGAGAAGACCATCACCTACAGACGAGACATGTCGGCCGAGATGCACATCACAAAGTGCCTCTGAACGCAGTCTGGGGAAGAGCAGCGGACGATGCGAGCGAAAGGAACAGGGGCCTGATGATTTAAATCTTCTGAGGTTTCACACTGGTAGTTTTCAgttgtattttgtgttctttGTCAGATTAATGATTGTGTGCTTTATCTATAGCAGGCAACGTAGAGAGGTTTCTTTAGCTGCTgttgtgcttttcatttcatttgtgaagAACAATGATCTCCCAGTGCTTTCCAGGCCAGACATCCATCTTCTGTAGAAGCATTCATCATCTAACTGCCTTCATTAATAAGGCAACTAAATACTTAGCTGATTAGCtattcatatatattgtatatatactgtgtgtgcgtgtgtatataaataaggcAAGTTTCTCACCCTGTTCATCCTAGAGTAACGACATGGGACTTATACGTATATGTACACACTAAACATCTTTGAATATGACAGTgggtgtgtatgtataatacacacatttatttattacaaaaaaataataactaactGGATTATTTGAACACTTCCACTCCGAGTGAACCTAACCTTTACAGTAACTCCAATAATCTCAAATAGAAACCCAGTGCTTAAGGGCTGCTAAAGCCTTTTTTTGGCTAAATGGAGGGTGACTATCACTTATTGGGTGCTGAGTCTCAGACTGGCGGGTCGGTAAAAGTTCTGAATTTAATCTGATtcttaatattatattacactTGTTTACACCTAAACGGTACAGATTCTTTAACACTGAAAGTTCCGGAATCCTCAAATCCAATATCACTCCTGTAACCTTTGCCATCAGTCGTTCTAATGCCATAAGTGCGTTGATGTGTAAGtgtacttttttgtgttttatttattctgtcagGTGTGTGTTGGCCACGTGGCTTTCATGTGTGGAGGAAAGGTACTGCTTGCAGTTGTAAGGCCTTTAAGTTTATGTTCTTTCAATTCATATGGTAATGTTAAAGCACACTCCCAGACCGTAGACGTACATTGtagaaaatgttaaatcaaggatgtttccacttcagGTCTGCAAGCATTTGTTCGAAATTCTGATATAGACTAGGTGCCAAAAAcaattgattttaaacattttgtaattccATGTAAATAAATCCAAAGAGATAAACCTGTTAAGAGAAAAAGTCAAGCATTTATTGCCTTTAGCCGTACAAGACTCTTACTGCAGGTGAAGACTAGGCGAGCGCTGGTGTGTGACAGGTGTTCCGCAATGGGGTGACAGAAGCAACCTAATGCTGTCCTCTAGTGGACAAACAAGTTTATCAGAATGGAgttcatgtaaaaaaataactaaccTATACCTTCAAACTCCTTGTAGAATATTAGTTGTGGAAATGGCTGAAATGAATGGTGTGCAGTCACGAATTGCACACGTGTGGTTGCATTGTGCATTACTACTGTCTTGAAACTGGAATGCGTTGCTCCAGAAAACCGAGTCCAGTACATCCCTCTTATtctgatgggggggggggtctctcTAGAAGCACACTACTGTGGGGGCAGTTAATCACGTGCCAGTAACCCCTCTGCGACGCCGGGCACCTGCTGGACTAGGTGTCTCTGCAATAACAAATGTGCTTTCAATGTTGGCGCCCAGTCTTTCTGTTTGCATCCCAGCACTGCGGGAGGGTACCAAGGGGAAAAGGGGCCGATTTAACAGTTTGAGGTGTTGTCCTGTGGGGATGATTggggatgtttttgtttttgtactcgCTGCTAGATTATACTTGTAGTTTTTAACACTAaggtatttatttagaaatgacaatttagttttatttttctaagtcaaacgtatttaatttatatttctagAATATTTAACTGTTagacttttaataaaatgttttatttatctagTTCGAAGAATCAAATTGTTGCCATTAGCTGCTTTATTGTAGTTTCTAATCTACAGATGACACGTGTTTGAAGGAGCATTAAATCATTAACTTTCACAAGTTATCTTTGTTCAGTCATTCAAAGCAATTTCATTGTGGGGCATTAGTCTGTAACAAATGCActgtttttaggtttttctttttctattatCACTGTAAGATTAATGTTCTGTAACTCCTTAGAAAACACTCATTAAA

Function

GO: NA

KEGG:

id description
K06591 ITGB8; integrin beta 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021602 True 5224 mRNA 0.47 14 22697164 22711144
TU108724 False 2581 lncRNA 0.40 4 22706899 22711120

Neighbor

gene id symbol gene type direction distance location
AMCG00021596 NA coding upstream 121317 22540922 ~ 22575847 (+)
AMCG00021595 NA coding upstream 170291 22504145 ~ 22526873 (+)
AMCG00021593 NA coding upstream 306573 22380250 ~ 22390591 (+)
AMCG00021590 tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755 coding upstream 395996 22293764 ~ 22301168 (+)
AMCG00021584 bzw2,LOC107702135 coding upstream 431974 22248251 ~ 22265190 (+)
AMCG00021604 NA coding downstream 121891 22833035 ~ 22839518 (+)
AMCG00021605 NA coding downstream 131648 22842792 ~ 22900445 (+)
AMCG00021606 NA coding downstream 190160 22901304 ~ 22901525 (+)
AMCG00021617 NA coding downstream 289345 23000489 ~ 23003768 (+)
AMCG00021613 klhl7 coding downstream 357716 23068860 ~ 23074075 (+)
G87091 NA non-coding upstream 68278 22628620 ~ 22628886 (+)
G87086 twist1 non-coding upstream 108239 22587214 ~ 22588925 (+)
G87030 agr2 non-coding upstream 390276 22303566 ~ 22306888 (+)
G86905 NA non-coding upstream 1058648 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 1180921 21516033 ~ 21516243 (+)
G87168 NA non-coding downstream 296250 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 433860 23145004 ~ 23191753 (+)
G87233 NA non-coding downstream 486477 23197621 ~ 23197869 (+)
G87288 NA non-coding downstream 777937 23489081 ~ 23584336 (+)
G87313 hoxa3 non-coding downstream 962748 23673892 ~ 23678603 (+)
AMCG00021591 NA other upstream 406023 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1439975 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1461084 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1464311 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 1531664 21158624 ~ 21165500 (+)
AMCG00021656 NA other downstream 1463259 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1472064 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 2198740 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2565632 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 3041213 25752357 ~ 25753253 (+)

Expression


Co-expression Network