AMCG00021612


Basic Information

Item Value
gene id AMCG00021612
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23075563 ~ 23080630 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021612
CGGGCAAGTTATCTGCTGGCCCCGGACTCTGAATTGCTAATAACGCAGGGCGCAGTGTGCTGGCGTAACGAACGTAAAGCCGCAGATCTTCGCAACTTGGCGTGGACTGGTAGCTTAGCATCACCCGTGGGGTAAATGGGAGACTGCCACCGCTTAAGAGATTTAATCTCGGACCTGTTTAGCGATGACGGTGTGCAGTTTCTTTCTTCAGGGGAGATGTCGCTACGGCGAGAAGTGCTGGAATGAGCACCCGAAGGACGGCGGCGGAGGCGGGTATGGAAGCTACCAGACCCGGCAGCAGAGCGGCCGAGGCGGCGGAGGCTTTGGGAACAGAGTGTGGATCAACCCCTCACAGAGGACTCCTGGTTCTGAATACATCCAGGCGTCGTCCTTCTCCAGGCAGGGGGACTGGGGCAGAGGCGGGGGAGCGAGAGATGAAGCCAGGGGTGGTTTTGGGGGCCCCTCAGGGTTTGGACAGGCTGACGAGGGCAGGAAGAGCTTTTCCAACACGGGGAGCTCCAGTTTCAGCTTCTCCTCACAGAACCACTTCTCTGCGTTGAATACCCAGCAAGACTTTGACAGAGGCAGCGCCGGAGATGATGCGGAAAAACATCTGGACACGATCAAGAAAGACATGGAGTCGTGGGAGAGCTCGGGACAGTGGATATTCTCCTGTTACTCTGCTCTCAAGAACTCTATCTCGGTCCAACAGCTCATAAATCAATGGAAGAACAGACTGCTGGAGTTAAAGACCCAGAACTCGGCGACACGAGCGGATCTGatTTCAGAGCTGACTAATCCCAGTCCTAAACCATCCTCCGTGCAGTTTGGTGCCCTGGTATCGTCCTCCTTCGGATCAGGAGGGTTTGGCGCCGGGGCcccacagagcagcagcagcagcaccttCAGTTTCCAGCCCACCGGCGGCTTCGGGAGTGCAGCCACACAGGGGGGTACGGTGGCCAGCCAGCCCCTGCCCAAGATCGGGGCATCGGGATCCGGCTTCGGCAGCACCTCTGCCCCCGCCTCCGCTGCCTCCTTCTCCTTCGCCGCCCCCACAGCAGACAAGGAACAGCCCTCGGGCTTCGGCGCTCCCTCTGGGTTCGGCTTCTCGTCGAGCTTCGGGGCGTCCGCCGCTCCCTCGTCTGTCGCCGCCCCCACGAACTCCTTCGGACAGTCGGGCGGCGGGTTTGGGGGCAGCGGCTCGACGGCCGTGGCCTCGGCCAGCACAGGCGCCGCCACGGGGAAGCTGTTCACCCCGCAGAGCGAGCTGAGCGCCGAGGAGCTGAAGGAGTTTGGAGAGAAAAGATTCACCCTGGGCAAAATCCCCCTACGGCCGCCCCCCGCGGACCTGCTGTCTGTTTAAGACCTGCATCTGTTCACTGATATCACGTGTTCTGTTGGCTGaggactttttctttttaaataaagatttatttttaaaagtgatgCTTTTCTGCTGCAGTCCACCAAAACAAAAGACTCATCTGCCTGTGGCTCTGTGCTGCTAACAGGGCGATGTAatgaaagttaattaaaatgaggAATGATTGTTCACATGTAGACTCATCTGTGAgatcagtatatatatgtatacactgaTACATctaacattcatttatttacaatacttTTAGGAAAGGTGTAATACCTtcaaagtgtgtgtatataaatatctatatagatgcatatacagctctggaaaacaatgttgagaccactgcaaaattatcagtttctctggttttactatttataggtatgtgttggggtaaaatgaacatttttgttttactgacaacatttctcccaaattccaaataaaaatatgaatgaaatggaatggctgccatacatgtagagatgctgatttaagacagATAtgtagtggtctcttaattttttccagagctgtatatataatacacctAAATAGGAGTTTCCTATGATTCTTGGGTAGTAACTAGTCTTGACAAAATCTTTCATTCAACCATAAATAAGGTAAGCAATAAATACAGGTAATTTGGGCCTCTTTTAATATGTATCCATTATATAATGCCTCACTGTATACAGATTACTACTTTCCTTGTGAGGGGAATGTTATGAAAGGCTAAAACattacctttttaattaaaactactaTGAAAGAATAATAGATATGAATGTATATGCCTCTAATATTGTACAAAACGAATATAGAAGCCATGTTATTTAGTTGGTGCATAGAAACTTGTCTTGCATTTGTAGACAGTTTGTCAGGTTTTTAAATCAATACCTCTGTTACACTTACAGTCACTGTATTGTAAATGAGGAGGTAGTAAATGTAcaggaaaaaatacagaaagccaTTGCTTACCAGATCCTATTTTGCCTCTTTCCCATACCCATGTGATTTCTTGTCCACATGGCAGATAAAGGAAGGTTggggtaaaaaacaaaaatcatgtgcctttttttttttaatgtacatttggAAAATTGCAAATATCATTTCAAACATCAATAGAAAAGTGAACAGGGTGTGTCTCCTCGGGCAAAGGATGAGCTGATACAAGAATACAGTATTTTCTTGTGGTTTTTATGGTGGCAGGCTTTTGAAGATGCAGACAATTTATTCTTTATATTGCTGGTATGGGAACCCTTAAAACAAAGTGCATCCTAAGTGATACATAAGTCActgcttaattaaacacatcaataaatcaaataaaac

Function

GO: NA

KEGG:

id description
K14321 NUPL2, NUP42, CG1; nucleoporin-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021612 True 2713 mRNA 0.47 6 23075563 23080630

Neighbor

gene id symbol gene type direction distance location
AMCG00021613 klhl7 coding upstream 1488 23068860 ~ 23074075 (+)
AMCG00021617 NA coding upstream 71795 23000489 ~ 23003768 (+)
AMCG00021606 NA coding upstream 174038 22901304 ~ 22901525 (+)
AMCG00021605 NA coding upstream 175118 22842792 ~ 22900445 (+)
AMCG00021604 NA coding upstream 236045 22833035 ~ 22839518 (+)
AMCG00021611 NA coding downstream 2670 23083300 ~ 23088905 (+)
AMCG00021618 NA coding downstream 8902 23089532 ~ 23092868 (+)
AMCG00021623 NA coding downstream 76249 23156879 ~ 23166512 (+)
AMCG00021624 NA coding downstream 87951 23168581 ~ 23180173 (+)
AMCG00021626 NA coding downstream 105642 23186272 ~ 23203415 (+)
G87168 NA non-coding upstream 60732 23007394 ~ 23014831 (+)
G87091 NA non-coding upstream 446677 22628620 ~ 22628886 (+)
G87086 twist1 non-coding upstream 486638 22587214 ~ 22588925 (+)
G87030 agr2 non-coding upstream 768675 22303566 ~ 22306888 (+)
G86905 NA non-coding upstream 1437047 21638276 ~ 21638516 (+)
G87215 NA non-coding downstream 64374 23145004 ~ 23191753 (+)
G87233 NA non-coding downstream 116991 23197621 ~ 23197869 (+)
G87288 NA non-coding downstream 408451 23489081 ~ 23584336 (+)
G87313 hoxa3 non-coding downstream 593262 23673892 ~ 23678603 (+)
G87321 NA non-coding downstream 606695 23687325 ~ 23692148 (+)
AMCG00021602 NA other upstream 364419 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 784422 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1818374 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1839483 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1842710 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 1093773 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1102578 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1829254 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2196146 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 2671727 25752357 ~ 25753253 (+)

Expression


Co-expression Network