AMCG00021615 (fam126a,LOC107667581,LOC107570921)


Basic Information

Item Value
gene id AMCG00021615
gene name fam126a,LOC107667581,LOC107570921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23026312 ~ 23048843 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021615
GGGGGGGGTGTGGCCGTCTGATGTGAAGAAACCCCCAGCTCTGCTGCAGGAAGAGGCCGGTCCGGGTAACGAGTACAGATCATACACTTTCTACCAGTTGTGCTGCATTCACACtcgcacacccacacacacccagccTCACTCACAGCTTGTGTTCTCTGCATTGATTGGTGTTTTTCTTGGCTCGTTCAGCCCTATGGATTGGAGGAAAGGaaagcaaattacaaaaatgctGGACAACAATTTAGAAAACCTTACAAAGTGTTCTGCTTGTGTGTGAAGACTTTCTGTGCATTTCCTGTTGTCTTGGAGACTTGTTCCATGTAGCTAGCTGCCACGATACTTCCTCTCGCGTTAAAACCTACCAGAAGCCAATGCAGGAAGATGTTGGCAATGGACCAAGGGGCAGTGGAAGAGTGGTTGTCTGAATTTAAGACTCTTCCAGAGACGGCGATTTCCAGTTATGCTGCATCTTTAAAAGACAAGACCTCCCTGGTTCCAGCTCTGTACAAGGTGATACGGGAAAGTCAGAGCGAGCTCCTGGAGCCCGTGTGTCACCAGCTCTTCGAGTTCTACCGCAGCGGAGAGGCCGGGCTGCGGCGCTTCACCCTGCAGTTCCTCCCTGAGCTCATCTGGTGCTGCCTGTCCCTGGCGGCCAGCCGGGACCTTCACCGCAGCGGCTGCATCGAGGCACTGCTGCTGGGCATCTATAACTTGGAAATAGTTGATAAAGATGGCCAGAGCAAAGTGTTAACGTTCACAGTCCCATCCTTGTCTAAGCCCTCCGTGTATCATGAGcCATCGACAATTGGCTCTCTGGCTCTCACAGAAGGAGCTCTGGCTAAGCATGGTCTGAGCAGAGTAGTGTTCAGTGGACCACACCCCCAGAGAGAGACTTTCACAGCACAGAACAGGTTTGAAGTGCTGACCTTCCTTCTGCTCTGTTACAACGCGGCCTTAAGCTACATGTCCACAACTTCACTCCAGTCCCTCTGCCAGCTCAGCTCCAGGATAAGTACCTGTGGGTATCCCAGGCAACATGTTCGAAAATACAAAGGCATCAACACTAGAATGTCAGTATCTTCTGAGTTTCTTGTTCAGTTGATAACTGGCATTTATTATGCACTGTATAACGGAGAGGCGGACATGGCCTCTAAGGCTTTAGATGATGTTCTGtacagagctcagctggaactgTATCCTGAAGCTTTGTTGGTGGGCAATGCAATCAAGTCGTCCTTGCACGGAGGCGCACTGAAATCAAACAACGAAGGCACTCGGTGTATTCAGGTAGAAATCACTCCAACATCATCGAGAATCTCCAGAAACGCAGTCACCAGCTTGTCGATCCGTGGGCATCGCTGGAAGAGACACGAGTCTCCTGAGAACAGTATTGACGCCCCCGACTCAGGGGCCGTCCCCGTCCCCGAGATTAGCGTGACAGGGGTGAGCGGCGAGCGCGTGCTGAACGGGGAGATGCAGAGGCACAGAGCCGAGGGCGAGGCGCAGGGGGTACAGGAGCCGGGCTCCGACTCTAGAGCAGATGGCAAGAGCATGTCTGAAATCAGGAGGCAGAAGTCTCAGAGGAGACTAATGGAGGATGATGCAGTGGATTTGGCTTCCCCAGAGGAGCTGATGGAGATCTCGGAGGTCGATGAAGGGTTTTGTTCCAGGGCTGCTCCCAGCTGCAGTCCTCCGGTGATCGTGATCAGCAGCAGTTTTCCCAGCGGGCGGACGCCGGGGAAGAGCCAGCGCAGGGTGGGCGGCAGCCGGGccgggaaggagagggagggcgGGCCGGAGAGCTGCCGGGACCAGCTGTCTCGCAAGCAGGCCCAGCGTGCCATGAGCGAGAACCTGGAACTGCTGTCCTTGAAGAGACTCACGCTCACCACCAGCCAGTCTCTGCCCAAGCCCGGCAGCCTGAGCCTGGCCCGCACCGCCAGCGCCGTCTTCAGCAAGTCGTTCGAGCAGGTCAGCAACGTGTTTGGCGCCGGCAACCCCACCTGCGCCGCCAACGCCCCCCCATCCGAGACCAACCGCTACTCCGCCTGCAGCCTCCAGGAAGACCGGCTGGCCTATGTGGCGGAGCGGGCCGAGCACCTGAGCCCCAACCCCCAGCACAAGCAGCAGCGCTCACCCAGTATCAGCATCCAACTCTCCACAGACCTGTGAGGCCGCTGCCCGGAGCTGGGCGGGACTCGAGCGCCGGCACCACCATGGCTGCCCACTGGAATCGCTGCTGGGCGCGGAGCCACGTTTGGAGGAAAGCAAGTATTCGCCTGAACAAAAGTTGAAGAATTTCAAGTGCCCCTTCGTTGGGCAGCACTGAGCAATAACTGTGTATCGGCTTAAATACATCCTGTTTGGGGCTAATGTTCGTTAGCTTCTTTGGATAATAATCACTAAACCAGGCTGAAATAAGTAAACCAATATAGCTGCCCAACTTAGCCCTGTTTGGCTCCTCTCCAGATCTCCAGCCTGGTGCGGTATCCGTCAGAagaaccacacacacagactgtcctACATTGTGCGCTCTACAACGTTGTGTTTTCTGATTGTGTAACTGTGTTTGAATGAATGTGTTAagccactgtaaaataaagaaacaattgaaAAGGGGATATAAGGATAATCTTGTGTGGTGAaaggaagaggggaaaaaagcaaataataaattttaaaaagcagcacaaTATCTAGAGGTTACATTTAGAAACCAGGGGTGTAGGTTAACCCTCACGACCTTAGCCACCTTAATGATGTCTGGTTTTAAGATTTTAGACAAGCGATTTTGATTTTGTGGTGTTTATGtgcaattttaactgttttaatgcCCCCCTCCACTCGAATCcctttgtaacatttattttgcacacagAAACCCTACAGTCCACTGTTAGAAACCAAAAGCCTGTCCATGTTTACATGTCATTGTCATTGTGATCTAAGCAATACCGATAGTCAGACGCAAAGTCATGTCCAGTGTTTGAAGTTTCTATCCTAGTTTTAGCAAGTGCTTATTTTTTAAGTTCTAAAACGTTTTAAACCCTAATTAAgtccttgtattttgtatactgTACAAGCCTAACTTCCACTAAGGGGAGGTGTAGGTGAGCAGTATTAATGGCCATGGCATTTCATTGCTTCGTCAAAGCACTCTGTACAGTACATTGCACCAGTGTGACACGGCTATATTTGTGTGATGGCAAAAAGCTTTCCCATCGAAGATTAGCAAAATAGtcatgttcattttgttttcctactGTTTCTCATTATCTTTTTACCTTTTGTAAagattttctaaaataaaataaaactaaataaaaca

Function

symbol description
fam126a Predicted to be involved in myelination; phosphatidylinositol phosphate biosynthetic process; and protein localization to plasma membrane. Predicted to be located in cytosol. Predicted to be active in plasma membrane. Is expressed in habenula and telencephalon. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 5. Orthologous to human FAM126A (family with sequence similarity 126 member A).

NR:

description
PREDICTED: hyccin

GO: NA

KEGG:

id description
K21844 FAM126; protein FAM126

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021615 True 3331 mRNA 0.51 12 23026312 23048843

Neighbor

gene id symbol gene type direction distance location
AMCG00021616 LOC105905466,LOC102209663,LOC102295699 coding downstream 3511 23017658 ~ 23022801 (-)
AMCG00021608 NA coding downstream 43780 22967670 ~ 22982532 (-)
AMCG00021610 NA coding downstream 69646 22947324 ~ 22956666 (-)
AMCG00021609 NA coding downstream 89011 22916457 ~ 22937301 (-)
AMCG00021607 NA coding downstream 119273 22901585 ~ 22907039 (-)
AMCG00021614 NA coding upstream 12690 23061533 ~ 23067739 (-)
AMCG00021620 igf2bp3,LOC108273237 coding upstream 47637 23096480 ~ 23109751 (-)
AMCG00021622 NA coding upstream 78377 23127220 ~ 23127477 (-)
AMCG00021621 tra2a,LOC107688335 coding upstream 96514 23145357 ~ 23152321 (-)
AMCG00021627 NA coding upstream 206096 23254939 ~ 23262180 (-)
G87181 NA non-coding downstream 11530 23007394 ~ 23014782 (-)
G87116 NA non-coding downstream 335423 22690608 ~ 22690889 (-)
G87092 NA non-coding downstream 397421 22628599 ~ 22628891 (-)
G86997 NA non-coding downstream 838172 22130806 ~ 22188140 (-)
G86925 NA non-coding downstream 1241178 21784876 ~ 21785134 (-)
G87193 NA non-coding upstream 26791 23075634 ~ 23076015 (-)
G87203 NA non-coding upstream 40759 23089602 ~ 23091111 (-)
G87218 NA non-coding upstream 44745 23093588 ~ 23106188 (-)
G87234 NA non-coding upstream 148738 23197581 ~ 23197843 (-)
G87269 NA non-coding upstream 322347 23371190 ~ 23372192 (-)
AMCG00021569 NA other downstream 1354997 21666402 ~ 21671315 (-)
G86808 NA other downstream 1942742 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2301432 20721884 ~ 20724880 (-)
G86649 NA other downstream 2628529 20395612 ~ 20397783 (-)
G86640 NA other downstream 2666057 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 106344 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 280482 23329325 ~ 23332968 (-)
G87263 NA other upstream 289408 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 446182 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1150693 24199536 ~ 24210205 (-)

Expression


Co-expression Network