AMCG00021616 (LOC105905466,LOC102209663,LOC102295699)


Basic Information

Item Value
gene id AMCG00021616
gene name LOC105905466,LOC102209663,LOC102295699
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23017658 ~ 23022801 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021616
ATGTCTCTCAGGATGGAGGTGGCCCAGTGCGGCAGTGTGGTCGTGGAGTTCGAGAGCGATGAGAGCAGAGAGGCTCGGGTCAGAAAGAGCAGGAGCATCCCAGGATCAGCTTTAATCTACCTCAGAGGCCCAAAGTTTCTGATATATGTCAGTGGTGCATTGTCAATGTGGGGTGACCGCATGTGGCACTTTGCCATCTCCGTCTTCCTTATTGAGCTTTACGGTCACAACTTGCTGCTGACCGCTGTCTTTGGCTTAGTGGTAGCCGGCTCTGTGCTCCTGCTTGGGGCTCTGATTGGTGACTGGGTGGACAGAAACCCCAGAAACAAAGTTGCACACGCATCTCTGTTCATTCAGAACATTTCGGTCACCATCTGCAGCATTGTGCTGATGCTGGTGTTTTCATACAAACAGTGGATTGAACAAATTTGGGATGGCTGGTTAACTGTGGTTTGTTATACGGTGGTGATCATCCTGGCAGATGTGGCTAACCTCGCAAGTACGGCCCTGACTATCGCCATCCAGAGGGACTGGATCGTCGTCATCACTGGGTACAACCGAGGACACCTGGCAGGAATGAATGCCACCATGAGAAGAATCGATCAGGTCACAAACATCCTGGCTCCCTTGGCAGTGGGGCAAGTGATGACTTTAGCATCCAACGTTGTGGGCTGCGGCTTCATCCTCGGCTGGAACCTGGTGTCGTTGATCGTGGAGTTTATTTTCCTCTCTAGAGTCTATCGCATTGTTCCTGCCTTGTCCGTGAAGCCGATGTCTGAGGACGGCGAAGACCAGCTACCGTACCTGGAGAGGGAGTCTGAAATAAAGAGTGTGCAGGGTGAGTATGGGACCATGTCCGTGTCTGTGGCTTCTTTCAGGCTGTTAACCTCTATTGGTGGCCTCCAGCTCAGCGAGACCTCGGAGATGACAGAAGAAAACTGCAACATCAGCCTGCATCTCAGAGAAATCACAAACCTCCCGCTGTGCCTCAGGAGATTCAAATGGCTGCTGAGCACCTGCAAAGATGGCTGGAAGGCCTACTACAGGCAGCCCGTGTTTCTGGCCGGCATGGGGCTGGCGTTCCTTTACACCACGGTGCTGGGCTTCGACTGCATCACCACGGGCTACGCGTACACTCAGGGCATCAGCGGCTCTCTGCTCAGTCTACTCATGGGCGTCTCCGCCATCACCGGGCTGATGGGCACGGTTCTGTTCACGAAGCTGCGGAAAGTTTACGGGCTGGTCACTACCGGGGTCATCTCCAGCTGCCTCCACCTCGGGTGTCTGCTGCTGTGCGTGGTGTCCGTGTTCGCGCCCGGGAGCCCCATGGACCTCAGCTTGCTGACCCCCTTCATGGATTCCAACTCCTCTGTGAACGAGGTCCCTTCCGGAGGACTCAAGCAGAAGAACAGCTACCCTCTTCAAGGCAGCAGTAACCAGCCCCTGCTGCCCGACCGCTCGTCCATCCACTGGACCAACAACACACTGCTGTTCGAGAACGTCCCCTCGGGCACGGCGCCAGACTCCTATGTGTCCATCATCCTGCTCTTCCTGGGCGTCATCACCGCTAGAATCGGCCTATGGTCGTTTGACCTGACCGTCACTCAGCTGCTCCAGGAGAACATCTGCGAATCGGAGCGGGGGGTGGTGAACGGTGTGCAGAGCTCCATGAACTACCTCATGGACCTTCTCCACTTCATCATGGTCATCTCCGCACCCCAGCCCCAGCACTTTGGCATCCTTGTCATCATCTCGGTGCTCTTCATCACGGCCGGCCACACGATGTACTTCATGTACGCCCGGAAAGCCAAGAGAAAACACCGGCCCAACACGTAG

Function

NR:

description
PREDICTED: solute carrier family 40 member 1-like

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021616 True 1836 mRNA 0.56 8 23017658 23022801

Neighbor

gene id symbol gene type direction distance location
AMCG00021608 NA coding downstream 35126 22967670 ~ 22982532 (-)
AMCG00021610 NA coding downstream 60992 22947324 ~ 22956666 (-)
AMCG00021609 NA coding downstream 80357 22916457 ~ 22937301 (-)
AMCG00021607 NA coding downstream 110619 22901585 ~ 22907039 (-)
AMCG00021603 sp8,sp8b,LOC101158882 coding downstream 293319 22722939 ~ 22724339 (-)
AMCG00021615 fam126a,LOC107667581,LOC107570921 coding upstream 3511 23026312 ~ 23048843 (-)
AMCG00021614 NA coding upstream 38732 23061533 ~ 23067739 (-)
AMCG00021620 igf2bp3,LOC108273237 coding upstream 73679 23096480 ~ 23109751 (-)
AMCG00021622 NA coding upstream 104419 23127220 ~ 23127477 (-)
AMCG00021621 tra2a,LOC107688335 coding upstream 122556 23145357 ~ 23152321 (-)
G87181 NA non-coding downstream 2876 23007394 ~ 23014782 (-)
G87116 NA non-coding downstream 326769 22690608 ~ 22690889 (-)
G87092 NA non-coding downstream 388767 22628599 ~ 22628891 (-)
G86997 NA non-coding downstream 829518 22130806 ~ 22188140 (-)
G86925 NA non-coding downstream 1232524 21784876 ~ 21785134 (-)
G87193 NA non-coding upstream 52833 23075634 ~ 23076015 (-)
G87203 NA non-coding upstream 66801 23089602 ~ 23091111 (-)
G87218 NA non-coding upstream 70787 23093588 ~ 23106188 (-)
G87234 NA non-coding upstream 174780 23197581 ~ 23197843 (-)
G87269 NA non-coding upstream 348389 23371190 ~ 23372192 (-)
AMCG00021569 NA other downstream 1346343 21666402 ~ 21671315 (-)
G86808 NA other downstream 1934088 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2292778 20721884 ~ 20724880 (-)
G86649 NA other downstream 2619875 20395612 ~ 20397783 (-)
G86640 NA other downstream 2657403 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 132386 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 306524 23329325 ~ 23332968 (-)
G87263 NA other upstream 315450 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 472224 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1176735 24199536 ~ 24210205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_07463735_07471367 NA coding CI01000016 null 7463735 ~ 7471828 (+)