AMCG00021619


Basic Information

Item Value
gene id AMCG00021619
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23155187 ~ 23160991 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021619
CGCGGCTGCCGGGACGGAAAGGGCTGGGTTATATCGGCAGCTCTGGAGGCATCGACGAGCCCTGCACACATCCGCGGACTCGTACGTGTAGACGGTGAAACACGGTCATCGGAGCGAGAGGCGAAGGCAAACGGCACCCGGTCCTCGGTGAAGCGGCATGGAGGGGCAGGCGAGCGGCTCTCGCTGAATGCCCGTCCCCGGCGTCGCGTCTGCGGCTGTGAGTCCAGATGCGGTGCATGAAGAGGTATGGATGAAGTGGACTTGTAATGTATCCAGTGCATTCAGCATTGCCCTGGCTCACGACAcgcatgtttttattattattattattattattattattactacattgGGGAAATGTATAGCATAAATAAAGGCGCAGTAACTCAAATTACAATATAACTTTTCTTTTGCTCAATAGTGAACTGAAGCGTTGGCACTGGAGGGGTCTTATAGCGCATGTGTGTGTACTTATTTTCCACGcgttgtttacatttttgttagttcatgtatttaaaaatgctggtATGCATGATCACATGTTTAGATATCAGTTTAGCTCTGTTGTGTGCTTAAATGCTTTCAAAGTGTGCCGCGTTGTGGGCTGCGTGTCCGGATGCGGATTTGAATAACGATGTGCAGCCCAACCTGCTCAGGGAACTGACCACCTGTCGAGGGACCTTTAATCCGGATCAGAGAGCAGACGCCAGCTGTAGGACAAACCGTTACTTTactaaaaagtaattaattacagACCAAACACATGTGTGGTACCGACAGATGTGCATCCAGCTTGATGCATGTCATATTGAAATAGTGACACTGAGCGGAGTTCATTATGATTTTGAATCAGTGATGGGATGTTTTTTTGAGTAGTTTTCCCTTGTATTAGTCAGTATCCTGAAGCAGTTTTTCTACTATAGTTTTAGTAAAATCATGCTGTGGTCAGGCAATACAGATccactttgtttattattaagtGACAATGTAGGGTGGAGGGGGGGATTAGTGGTGCTggattgaaaattgaaatactCAAAGGTTGAATATGCCACTTATAATGGAAAACCAGACATTGTGATTCACAACAAGAGCCCAACCCTAGCAATTCTGTATTTGATCACTTGCCGGGTGGTATGTACTTACTTTTATGTCAATTAAAATTCCAGACActtgtaataaaatatagtgGCTTTCTATTCATTTGggactgtaaaacaaaaaagtatttgtacagAGGGACCAAATAAACCAGACGGCTGTTTTGGACTGTTGTATTATTCTGTGTGCAGCCATTGTGGAAGTGTAGCTGCTGTGTGGAAAATGCACCGTGCAGTTATTGACATACATGATTACAAGTGTGGATCCTAATGCTGTTCCATACATTATCTCTTGTCACTTTGTGCCGACATCTGTTTAATATCAGTTGACCTCGCTGGGAGAATGTGCAGAATGCCAGCTGCCTGCAATGtacaacacattttcacaataatTGTAAAATCGTGTCAGGAAATGTTGCAAATGCCACAGAACAATGAGGGGAAATCAAGGTCCTGATAAGTTTTTAGACGTTTTATGTGCTTTAtctaaaataaagcagtgtttaTATGCGTAGGGAATTCTATTCAGAGGTAGTGATGGTCTTCATATATGCAGGCCACTGTTTCCAGTACAGTATGACCGAGGCCtgccacaaaataaatgcatctgaaaCTGCATAATAGGCAGTTGATTATTCATATAGTTAATTGCCTTCATTCTCTGTCAAGTTGTTTACCATGTCATATATGATGTTTTCACTGTACTCTCCAGTGTTGCTCTTCtggaagtgttttttgtttggccAGAAATGGTGCTTGATACAATAAACCATGGGAATAAATATTTGACTTGGTTACATTGAATGCAAAATGTCTTTGTTCTGTAAAGGCAAGGTGACCTGCATAATCACTCTTATCTCCTGAGAGAATTTGCTGGGTGAGGCTCGCCGTGCAAATATCAGACAGACATGCAGTGCTGGAGCCAAAGCATATTGAAGTTCTGCTGCACCAGGGTATTTTGGCACAAGATCagatgtcatttattttctaggtAAACTATTTAGTGGATGCCGGGAGCTCCTGCAGTAATCGCTGTACATCCTTACTTTACTGTTAATCAGCAGCTTTCAGCTCAGTATAATTTTGAGCAGCAAAATGACATGATTGATTTAATCAGTTACACTGTATTTCAGTACAATTTAGACAAGTAAACTCAGATACACAATCTGTATCTCCAGCATCTGAGCTGTAAGTGAAGTTGGGGGTAAAGTGATAATGATATAAAAACTGCAAGCAAAGCTTACAGAGTGAATTCACAAGGAATAGTTTGCAGTTTTCACTCCTTTATTAATGGTACATATTTGTTAATGAAGGTGCTGTGGTGTTTTTAACAGGCAGAAGACGGTTATAAAAAGCCGGTTGTGCTGTATGTGATTGGTGCTGCCAGGCTCTACGTGAAGCATGGAGAGCGAGACATGATATGAGCCTGGCTACTCCGGTTGAGGAAGGTGGAGGCTCCCGGGGGGCAGCCGGATTGGTATCCTATATCCAGCTACCAGCTCGCTTTCACAAATTCAGCTGCTGCAGCCAGATGTGTAGTGCTTTATAATCATGTGACACACTGTGCCccccctttaaataaataattacatccaAGAACcttatgttttgtataaagGGGATcataacatttttgttaaactTTTTGTCAATCAGATCACAATACAGGCCTAGTTTTGGACCCCCATACTCTCCTGTTTTACAGATAGTTTTTCTAAAATCCATCAAGAAACATCCTGTGAAATGTCAGATCATAAGTacatacaaatttaaaactaccaccattttcaaatgcatggaGTTGATGTAGGAAAAGCtctaattgctttttaaattcagaGACACCGGAACCAGGAAAGTAACCTTTTCTCACTTAAACCTGAGagcattaatattaaaatcatcattttgttttgcagggtaacatttcttgaaatgtggaaatCCAATGCAACATCCTGTGGCAACTGACCAGAGACCTATGCATGGCAACGCAATCCTCGCCTCTGACAAGCACTTGAACACCAGGCTTCATGGTTGGATACCAGGAAATAAACGGGTTCTTTGGTTGTACTTGTAGAACATCATGCTTGGACCTCTGCTTCGAAAAAACATGTCCCAGAAACTAAGTATACTGTTGCTGATCTTTGGCTTTATCTGGGGCTTGATGCTCATGCGATACACTTTTCAGCAGCCCAGACACCAAAGCAGTGCTCAACTGCGGGAGCAAATCCTTGACCTTAGCAAGAAATACGTCAAGGTGCTGACCGAGGAGAATCAGAACTCAGATGGGTTACACGGCACATCCATGGCTGGATACGCTGATCTCAAGCGGACCATTGCAGTCCTACTGGACGACATTCTGCAGCGCCTGGTGAAGTTGGAGAGCAAAGTGGATATTGTAGTGAATGGCTCCATGACAAATGCCACAAACAGTGTCGGGGGCATCCCACCACCTGCCATCTCCAACAAGCATccagaaaaagcagaaaacgGGAGATAGCAAGTTTGCAGAGCGCGTGGAGGTGGGGGACAGAAGGGTCTTAAAATGCTGATTCTGAAAACATTGCATCGTAGAATTGCCTGTGCTTGTTGCTCATTAGCAGCTTCTCAAAGGtattttaatcatgttttttcgTTGTCGGGCAACATTTCATAGAGAATTTTCACCATTTGATTCAGTTTTTTATTCTAAACAATGTATATAgctaattatatttaaaatgttatgttgtagttttttttttttttttttt
>TU108883
CGGAAAGGGCTGGGTTATATCGGCAGCTCTGGAGGCATCGACGAGCCCTGCACACATCCGCGGACTCGTACGTGTAGACGGTGAAACACGGTCATCGGAGCGAGAGGCGAAGGCAAACGGCACCCGGTCCTCGGTGAAGCGGCATGGAGGGGCAGGCGAGCGGCTCTCGCTGAATGCCCGTCCCCGGCGTCGCGTCTGCGGCTGTGAGTCCAGATGCGGTGCATGAAGAGggtaacatttcttgaaatgtggaaatCCAATGCAACATCCTGTGGCAACTGACCAGAGACCTATGCATGGCAACGCAATCCTCGCCTCTGACAAGCACTTGAACACCAGGCTTCATGGTTGGATACCAGGAAATAAACGGGTTCTTTGGTTGTACTTGTAGAACATCATGCTTGGACCTCTGCTTCGAAAAAACATGTCCCAGAAACTAAGTATACTGTTGCTGATCTTTGGCTTTATCTGGGGCTTGATGCTCATGCGATACACTTTTCAGCAGCCCAGACACCAAAGCAGTGCTCAACTGCGGGAGCAAATCCTTGACCTTAGCAAGAAATACGTCAAGGTGCTGACCGAGGAGAATCAGAACTCAGATGGGTTACACGGCACATCCATGGCTGGATACGCTGATCTCAAGCGGACCATTGCAGTCCTACTGGACGACATTCTGCAGCGCCTGGTGAAGTTGGAGAGCAAAGTGGATATTGTAGTGAATGGCTCCATGACAAATGCCACAAACAGTGTCGGGGGCATCCCACCACCTGCCATCTCCAACAAGCATccagaaaaagcagaaaacgGGAGATAGCAAGTTTGCAGAGCGCGTGGAGGTGGGGGACAGAAGGGTCTTAAAATGCTGATTCTGAAAACATTGCATCGTAGAATTGCCTGTGCTTGTTGCTCATTAGCAGCTTCTCAAAGGtattttaatcatgttttttcgTTGTCGGGCAACATTTCATAGAGAATTTTCACCATTTGATTCAGTTTTTTATTCTAAACAATGTATATAgctaattatatttaaaatgttatgttgtagtttttttttttttttttttttaaatgaccaaaCTGAAGAAAAGCAGATGTAATATTTGTTTGGATGGAGTTATAagaactttatatatatactaatcaatatatatgtatgtgtacatatctGTTTTACTTGAGTGCTTTACTTGACTGGTCATGAAATTGTTCTTTCAGCATTaagcattttctacattttactaaaacagtatatGATCTAGCTTTTGACatttacaatgtacagtaaattaTACAAGAAAAAACCCAAAGAATGTTATTTGCACTGTATGTGaagactaaataaatgtatttgtcttagATTAACcaatgagatatatatatatatatataaaatcgaCTAGAATGTAAGATTCATCAAGCTGGAAAATCAATCCTTGATCTCTCTCATGCATgatatagcctacatattatACATCTCTTGTGTAAAATGCTTTGGacaaaaaatattgcttttaagattttagattttaaaattactttaaaaggaaacgtcatgaaaattattttaaacctatCGCCTTTTATTAAGACAGGAGCTATCACTGACTTCTGAACAAATAAGccttaaaaacattatattttcttgttgtttttttaataatacaaatgccaTCGAGGGATTTATGAATGAGTAAATTGGCAGTATAACAAGGTCCTGTTGTTTTAAAGTGTCATTGGTTAGTGACCCAATACAACCTTAAGCTTGGGTTGGTCAGAACTAGACTGAAGGATAAAATATTTTAGGATGACATATGCAAATCCCACTAACTTTTTGCacctgttattttgtatttatatgtagaAATGTGCAATAGCAGTAGGACTCTGAAGAGTCGTTTTTTTTGGCAGGAAGTAATCCCCTCCAGTTTGAAGCCAAGTGCACAAAAGGGTCATCGCACATGTCCTTGCTGGTGCTTTTACACGTCTGTTCACACAGGTTTAGCTTGTGTGAAGATCAATATCACTGCTCCTCACACCAATGACTGAGTAAAATGTAATAGGAAATGTCACAATCCACCCTTCGTGTAGCTTCTAGGAAGTTGCAagctttttaatgaaaatagtgGGGATGGGTTCAAACCATACATGAAATGTGCCGTAGGTTATTTGACTTGTCTTATCtctatattgtacattttaagagTGCTGGGATGTAGATgagtgttttttggtttgtgtgtatTGTAGACCTCTCTGAAAAGGCTGCAAAGCATTCTGGTACACTGGGTTACACACGTTTTGTTTTGATGATCGGAAAAACATGTCCCTGCCATCATTGTTTCTTAATGTCCACTCAGTGTGTATGCAGACAATTAAGACttatcagtttcattttttatttttttttaatcaaagtgtGAACTGTGTTTCTCCTTGGAAATGTCTTTAGAAATGTGActtgttttacttttcaaaCGATGCTTTCTGAACACTCCTACCTATATCATTGATACTGGTGTTTCCCCGCAGATGTGTGTTACAGAAAACATCCAAATGTAACATTAAAGATTCACTATACTTGAAATCTGTACTTGAGGAAACAATTACAATGTAACTTTTTCTGGCATAGTTACAGGTTTtattctttctattttctttgtcatatttaatttgtttatttcaacatcccaattaatattgtatgatttaaaaatcaCTGCTTTTTACAGTACTGTTGTGCTTGTCATGAAATATGGAACTCATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021619 True 3856 mRNA 0.42 2 23156889 23160991
TU108883 False 2769 TUCP 0.39 3 23155187 23160977

Neighbor

gene id symbol gene type direction distance location
AMCG00021621 tra2a,LOC107688335 coding downstream 2866 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 27710 23127220 ~ 23127477 (-)
AMCG00021620 igf2bp3,LOC108273237 coding downstream 45436 23096480 ~ 23109751 (-)
AMCG00021614 NA coding downstream 87448 23061533 ~ 23067739 (-)
AMCG00021615 fam126a,LOC107667581,LOC107570921 coding downstream 106344 23026312 ~ 23048843 (-)
AMCG00021627 NA coding upstream 93948 23254939 ~ 23262180 (-)
AMCG00021629 NA coding upstream 104759 23265750 ~ 23303746 (-)
AMCG00021637 NA coding upstream 505602 23666593 ~ 23667210 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding upstream 510434 23671425 ~ 23673576 (-)
AMCG00021636 NA coding upstream 516840 23677831 ~ 23685846 (-)
G87218 NA non-coding downstream 48999 23093588 ~ 23106188 (-)
G87203 NA non-coding downstream 64076 23089602 ~ 23091111 (-)
G87193 NA non-coding downstream 79172 23075634 ~ 23076015 (-)
G87181 NA non-coding downstream 140405 23007394 ~ 23014782 (-)
G87116 NA non-coding downstream 464298 22690608 ~ 22690889 (-)
G87234 NA non-coding upstream 36590 23197581 ~ 23197843 (-)
G87269 NA non-coding upstream 210199 23371190 ~ 23372192 (-)
G87282 NA non-coding upstream 272225 23433216 ~ 23481900 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding upstream 321981 23482972 ~ 23488212 (-)
G87427 NA non-coding upstream 915908 24076899 ~ 24077107 (-)
AMCG00021569 NA other downstream 1483872 21666402 ~ 21671315 (-)
G86808 NA other downstream 2071617 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2430307 20721884 ~ 20724880 (-)
G86649 NA other downstream 2757404 20395612 ~ 20397783 (-)
G86640 NA other downstream 2794932 20358301 ~ 20360255 (-)
AMCG00021630 NA other upstream 168334 23329325 ~ 23332968 (-)
G87263 NA other upstream 177260 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 334034 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1038545 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 1181909 24342900 ~ 24363459 (-)

Expression


Co-expression Network