AMCG00021620 (igf2bp3,LOC108273237)


Basic Information

Item Value
gene id AMCG00021620
gene name igf2bp3,LOC108273237
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23096480 ~ 23109751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021620
ATGGAGTTTACTCCGCTCTCTGGAACAAAGGTTGGTGTGCGCTGTAAACGAATCCCGGAGGAGATGCCAAATGTAGAGGCAGAAGGCCGCATTCCTAGGGTATTAGATGGCTTACTAGCTCAGTATGGCACTGTAGAAAGTTGTGAACAAGtGAACACTGAGACCGAAACTGCAGTGGTCAATGTGAAGTATGGTGCCAAGGACCAGGCCAGACTAGCGATTGAGAAGCTGAATGGCTATCAGATGGAAAGCTATGCTCTGAAGGTGTCGTACATCCCAGACGAGATGGCTGCACAGCCACCCCCACAGGCACACCCTCTTGCTGGACGGCGTGGCTTTGGGCCACGGGGGCCTCCTCGCCAGGGCTCCCCTGGGGGGGGCGCCCGGCCCAAGCAGCAGTCCGACGTGCCGCTGCGCGTGCTGGTGCCCACTCAGTTTGTGGGGGCCATAATCGGTAAAGAGGGGGCTACCATCAGGaacattacaaaacagacacagtcCAAGATTGATATCCACCGGAAGGAGAACGCAGGTGCCGCGGAGAAGCCCATCACCATTCACTCAACCCCGGAAGGATGCTCTGCTGCTTGCAAAACCATCATGGAGATCATGCAAAAAGAAGCTCAGGACACTAAATTCACTGAAGAAATTCCTTTGAAGATCCTCgcacacaacaactttgttggCCGTCTAATCGGGAAAGAAGGAAGAAATCTGAAGAAGATTGAGCAAGACACTGACACAAAGATCACCATTTCTCCGTTGCAGGATCTAACGCTTTATAATCCAGAAAGAACAATCACAGTCAAAGGCACCATTGAAGCCTGTGCCAAAGCAGAAGAGGAAGTCATGAAGAAAATCAGAGAGTCTTATGAGAATGACGTGGCTGCTATGAATCTCCAGTCGAACTTAATCCCTGGGTTAAATCTGAACGCTCTGGGCCTATTCCCCCCATCCTCGCCCACCATGACTCCCCCGATGATGGCGGCCCCTCCAGCCGGGGCCGGGGCAGCAGCCTATCCCTCCATGGGGCAGCCGCCAGAATCCGAGACGGTACATTTGTTTATCCCGGCGCTGGCGGTTGGAGCCATCATTGGCAAACAGGGACAACACATCAAACAGCTCTCACGCTTTGCAGGAGCTTCTATTAAGATTACTCCAGCCGAAGGACCAGATGCCAAGCAGAGAATGGTGATCATCACTGGCCCACCAGAGGCCCAGTTCAAGGCTCAAGGAAGATTATTTGGCAAACTAAAAGAAGAGAACTTCTTTGGGCccaaggaggaagtgaaactgGAAGCTCATATAAAAGTGCCATCTTATGCTGCTGGTAGAGTTATCGGCAAGGGTGGTAAAACGGTGAACGAGCTGCAGAACCTCACCAGCGCAGAAGTGGTTGTCCCCAGAGACCAGACTCCTGATGAAAACGATCAAGTCATCGTGAAAATTACAGGCCATTTCTACTCAAGCCAG

Function

symbol description
igf2bp3 Enables mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to act upstream of or within mRNA transport and regulation of translation. Predicted to be active in cytosol and nucleus. Is expressed in oocyte stage I and oocyte stage V. Orthologous to human IGF2BP3 (insulin like growth factor 2 mRNA binding protein 3).

NR:

description
PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3 isoform X2

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K17391 IGF2BP1; insulin-like growth factor 2 mRNA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021620 True 1473 mRNA 0.52 13 23096480 23109751

Neighbor

gene id symbol gene type direction distance location
AMCG00021614 NA coding downstream 28741 23061533 ~ 23067739 (-)
AMCG00021615 fam126a,LOC107667581,LOC107570921 coding downstream 47637 23026312 ~ 23048843 (-)
AMCG00021616 LOC105905466,LOC102209663,LOC102295699 coding downstream 73679 23017658 ~ 23022801 (-)
AMCG00021608 NA coding downstream 113948 22967670 ~ 22982532 (-)
AMCG00021610 NA coding downstream 139814 22947324 ~ 22956666 (-)
AMCG00021622 NA coding upstream 17469 23127220 ~ 23127477 (-)
AMCG00021621 tra2a,LOC107688335 coding upstream 35606 23145357 ~ 23152321 (-)
AMCG00021627 NA coding upstream 145188 23254939 ~ 23262180 (-)
AMCG00021629 NA coding upstream 155999 23265750 ~ 23303746 (-)
AMCG00021637 NA coding upstream 556842 23666593 ~ 23667210 (-)
G87203 NA non-coding downstream 5369 23089602 ~ 23091111 (-)
G87193 NA non-coding downstream 20465 23075634 ~ 23076015 (-)
G87181 NA non-coding downstream 81698 23007394 ~ 23014782 (-)
G87116 NA non-coding downstream 405591 22690608 ~ 22690889 (-)
G87092 NA non-coding downstream 467589 22628599 ~ 22628891 (-)
G87234 NA non-coding upstream 87830 23197581 ~ 23197843 (-)
G87269 NA non-coding upstream 261439 23371190 ~ 23372192 (-)
G87282 NA non-coding upstream 323465 23433216 ~ 23481900 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding upstream 373221 23482972 ~ 23488212 (-)
G87427 NA non-coding upstream 967148 24076899 ~ 24077107 (-)
AMCG00021569 NA other downstream 1425165 21666402 ~ 21671315 (-)
G86808 NA other downstream 2012910 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2371600 20721884 ~ 20724880 (-)
G86649 NA other downstream 2698697 20395612 ~ 20397783 (-)
G86640 NA other downstream 2736225 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 45436 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 219574 23329325 ~ 23332968 (-)
G87263 NA other upstream 228500 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 385274 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1089785 24199536 ~ 24210205 (-)

Expression


Co-expression Network