AMCG00021623



Basic Information


Item Value
gene id AMCG00021623
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23156879 ~ 23166512 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00021623
ggtcatttaaaaaaaaaaaaaaaaaaaaactacaacataacattttaaatataattagcTATATACATTGTTTAGAATAAAAAACTGAATCAAATGGTGAAAATTCTCTATGAAATGTTGCCCGACAAcgaaaaaacatgattaaaataCCTTTGAGAAGCTGCTAATGAGCAACAAGCACAGGCAATTCTACGATGCAATGTTTTCAGAATCAGCATTTTAAGACCCTTCTGTCCCCCACCTCCACGCGCTCTGCAAACTTGCTATCTCCcgttttctgctttttctggATGCTTGTTGGAGATGGCAGGTGGTGGGATGCCCCCGACACTGTTTGTGGCATTTGTCATGGAGCCATTCACTACAATATCCACTTTGCTCTCCAACTTCACCAGGCGCTGCAGAATGTCGTCCAGTAGGACTGCAATGGTCCGCTTGAGATCAGCGTATCCAGCCATGGATGTGCCGTGTAACCCATCTGAGTTCTGATTCTCCTCGGTCAGCACCTTGACGTATTTCTTGCTAAGGTCAAGGATTTGCTCCCGCAGTTGAGCACTGCTTTGGTGTCTGGGCTGCTGAAAAGTGTATCGCATGAGCATCAAGCCCCAGATAAAGCCAAAGATCAGCAACAGTATACTTAGTTTCTGGGACATGTTTTTTCGAAGCAGAGGTCCAAGCATGATGTTCTACAAGTACAACCAAAGAACCCGTTTATTTCCTGGTATCCAACCATGAAGCCTGGTGTTCAAGTGCTTGTCAGAGGCGAGGATTGCGTTGCCATGCATAGGTCTCTGGTCAGTTGCCACAGGATGTTGCATTGGatttccacatttcaagaaatgttaccctCTTCATGCACCGCATCTGGACTCACAGCCGCAGACGCGACGCCGGGGACGGGCATTCAGCGAGAGCCGCTCGCCTGCCCCTCCATGCCGCTTCACCGAGGACCGGGTGCCGTTTGCCTTCGCCTCTCGCTCCGATGACCGTGTTTCACCGTCTACACGTACGAGTCCGCGGATGTGTGCAGGGCTCGTCGATGCCTCCAGAGCTGCCGATATAACCCAGCCCTTTCCGTCCCGGCAGCCGCGCATCGACGCCGTAAACACAAACGCGGCGCAGAGGCTGACGGGAAACGTATTTTGGGTTGCTTTACGGTGTGAAAGCGTGGATCCTTTTTTAAAGTTATAATCAGGTTTTAGTGACACGTACTCACATAAACAGTGATGGCaatctttataaataaaacaggctAGTTTagttcattacattaaataataaacgaTAATATGAGGATAAAGTTGGGCTGTTGAGATTTGCAGATTTCTATATAACGTAACTTGTATATATTCACCGTGCTGATCAGGTGATGTATTTGGTTTTTGGGTGAAGTGTTTGCACTTTTAAGTTCATCAAATAACCCTGCGGATGAAGAGCACGCCCTCCGTGTGATCCGGGTGCTGCGCGCACCTGACTCCCGACGCCCAGCGACAGTAACAGCGACGCTACACACGCACTACACACGCACTGCACACACCCTGCGGTAACTGCACCACAGTTACACCTGGACACGGTAAACCGGCCTTCAGATACAGTCACATATACGAGAGCCAGTAGCTAGTGTGCAATGGAGAGGATGCGCATCAATGCGGACGCGGCGGCGGCGGTTGAGAAGTACTTGGAGTACCGGAGGATTGTGGGAGAAGACGACGGGGGGCAGCTCTTCACTCCAGAGGAATATGAGGAGTATAAGAACAAGGTGTTACCTCAGCGGATGCAGAACAGGTTGTACGTCAGCTGGGGTGTGCCTGGAGGTATTGACTGTAAACTCATCGGTCCTGAAACACCCTGCTTCTGTACGCACAGGTACAAACAGCACAAAACTGACTTTAAGCAGATCCCAGAAGGACGGCCTCTTTTGCTGCCGTGTAAAGTGAAGGGGTGCAGGTGTGAGTCCTACCACTACGTCCCTCTGAACGGCTCCCAGCCCGTGCGTTGCAGGTGTAAGCACTTCCCAGACGAACACAGTGAAGCAGGGGGCTTCGTCTGCAAGAGGTGTTCCACTTGCGTTGGATTTCATAGCCCTTACACTTGTGGTTGCCGGCAGCCTAGCTTCTCCCACGAGACGTTAGTGGAGACTAAGGAGGAGAGGCAGGCGCGGGGCAGGCCCGTGGGGAAGGATGTTCCCTACGCTGCGATGGGAGGCTTGACTGGGTTCAGCTCTCTGGCAGAGGGATATATGAGGCTGGATGACAGTGGGGTTGGTGCTCCACCTCGTGATGTGTTGGAATCCGCTGGGACAGCCATGGACCACACAGTCGTTAAAACATATGAAGGACGGCAGCTGCAGCCAGgCTTCGATGTAAACTCTGTGGCAACGCAAATGTCACGTGTGAAAACCTCTGAAGAGGAGGACATGGCCTATTTTGAGAGGCGTTACCAGGAAAGAttgaaaaatgagaaaatggcAAAACATCAAAAGGGCGCCTCCTCATCCAGAGCCAAACCGCCCTCTGGGACGTCTCCCCAGACGCAGAAGTAACTTCATTCCCAAGACCTGTGGAGGAAGATCTTGCTTGGTTGGCTGTTGATGTGTGATTACATTAACCTAGTTTTCTTTATTCCCTGCCCTTGAAAAGGTGTAATGAATTCTTGATATTTTAGTATTATAGAATAAAACTTTAATGAATTGAATCTGTAAAATTGTTCTTTAATTAAAGGACTAGGCTGATATTGAATCGCTGCTCCTGTGATATAAATGCACAGAATTTATTACAGATTTCTTCATGTTACTTTAAAGGCACTGGACATTtgaaatgctgtatttattagttctgtttgtaacatttcttccagctgtttactatatttatttattttctcaacagAAGtcaaaattaagattaattCATTAAGGTACAAAgcacaaattatacatataacAAACTAATTCGCTGAgggtttgttttagtatttttttcccctcacagatgtatgtattaattgtatttaaatacagaaagtaTTCTTTATATTCCTGAAGAGCATTATTGttcatgatttaatttacagttgaataaatgtataaacagc

Function


GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00021623 True 3093 mRNA 0.46 9 23156879 23166512

Neighbor


gene id symbol gene type direction distance location
AMCG00021618 NA coding upstream 64011 23089532 ~ 23092868 (+)
AMCG00021611 NA coding upstream 67974 23083300 ~ 23088905 (+)
AMCG00021612 NA coding upstream 76249 23075563 ~ 23080630 (+)
AMCG00021613 klhl7 coding upstream 82804 23068860 ~ 23074075 (+)
AMCG00021617 NA coding upstream 153111 23000489 ~ 23003768 (+)
AMCG00021624 NA coding downstream 2069 23168581 ~ 23180173 (+)
AMCG00021626 NA coding downstream 19760 23186272 ~ 23203415 (+)
AMCG00021625 mpp6,LOC106570530,LOC106588853 coding downstream 46859 23213371 ~ 23253206 (+)
AMCG00021628 LOC103364058,LOC106950171,LOC107743218 coding downstream 177378 23343890 ~ 23369320 (+)
AMCG00021633 NA coding downstream 303520 23470032 ~ 23480552 (+)
G87168 NA non-coding upstream 142048 23007394 ~ 23014831 (+)
G87091 NA non-coding upstream 527993 22628620 ~ 22628886 (+)
G87086 twist1 non-coding upstream 567954 22587214 ~ 22588925 (+)
G87030 agr2 non-coding upstream 849991 22303566 ~ 22306888 (+)
G86905 NA non-coding upstream 1518363 21638276 ~ 21638516 (+)
G87233 NA non-coding downstream 31109 23197621 ~ 23197869 (+)
G87288 NA non-coding downstream 322569 23489081 ~ 23584336 (+)
G87313 hoxa3 non-coding downstream 507380 23673892 ~ 23678603 (+)
G87321 NA non-coding downstream 520813 23687325 ~ 23692148 (+)
G87402 NA non-coding downstream 863332 24029844 ~ 24032117 (+)
AMCG00021602 NA other upstream 445735 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 865738 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1899690 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1920799 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1924026 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 1007891 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1016696 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1743372 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2110264 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 2585845 25752357 ~ 25753253 (+)

Expression



Co-expression Network