AMCG00021625 (mpp6,LOC106570530,LOC106588853)


Basic Information

Item Value
gene id AMCG00021625
gene name mpp6,LOC106570530,LOC106588853
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23213371 ~ 23253206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021625
ATGAATTCCCAGCAGTGGCTAGTGGAGCTGTGCCAGGCTGCCGTTGTCCAGACCTGCTGCAGAGGCGATATCCACCGACCGTTCATTGTTCTCTGGGGCTTCACCAAGGCGCAGTATATCAGCACGCCTCCTTACTTAAACTGCTCCTCATCCCTCATCGACACTCTGCTGCACACCAGGGAATGTGAACTGGGCCAAAGTGGAATTAAATTCAACACAGCCCTGCAGGGAGCCCAGTTCTCATCTGTGAAGGTTCCCCTGTGTTCCTCTGCTGTGACCGATGAGAAGTGTGCAGTAGGTGTCTGTTGGAAGACCACGGCTGCCGTTCTGACGGGCGACACTGCCTGGCACAGCTCTGTGGCAACCTGCAGCTACCATGAGTTCAGGAGAGTTTCTGTGCACATGGGGGAGCCTGGATTGAGCTTTCACACAACGCTGGGCACACTGCTGCTGTCATCACTCACCCAAGCTGgctctcctctctgggcagtCGAACCGGAGGACTCCCACGAGCAATTAGTCAGATCGATCTGTGGACAAGGAGCCGTCCAGAGAAAAGAGCGCACATCTATTCTGTTCCTAGCGATGGTTTTCTTAGTCGAAGATGGATATCCAAATGGTTTAGATTCATCTCCTGAAGGAGACAGTACTTCGTCAGAGGAAGGAGCCAATACTTCAGTAGCAATGCAACAGGTTCTCGATAACCTCAATGAGCTGCCCACCACCACCGGGGCCAAGAACATAGACCTCATCTTCCTCCGGGGCATCATGGAGAGCCCCATCGTCAGGTCCCTGGCAAAGGCTCACGAGCGGCTGGAGGATGTGAAACTGGAAGCGGTGAGCGACAACAACATGGAGCTGGTCAGCGAGATCCTCGATGACATCAGCCCTCTGACCAGTAAGGACGACAGCGCTGCGGAGCTGTCCCGCATCCTCAAAGAGCCGCACTTCCAGTCGCTGCTCGAAGCTCACGATATGGTGGCATCGAAATGCTATGAACCCCCTCAGTCCAGCTCTGAAGTCAATAACGACACCGTGGCCCCCAACCAGCTGCTCCAGGCAGATGCCGGGGTGACGTTCCGGGTGGAGAGCAATGACCTGGTGATCGCACGCATCCTCCATGGGGGCATGATCGACCGGCAGGGCCTGTTGCACGTGGGCGACGTCATCAAGGAGGTCAACGGCCGTGACGTGGGCAACAATCCCAAGGAGCTGCAGGAGATGCTGAAGAACTGCAGCGGCGGCATCACGCTGAAAATCCTCCCCAGCTACAAGGACGCCCCGCCACCGCAGCAGGTCTATGTAAAACCTCATTTTGATTATAATCCAGGCCACGACAATCTAATCCCTTGCAAAGAGGCCGGCCTGGCCTTTTCCCGGGGGGACATCTTGCAGATCGTCAACAGAGAAGACTCCAACTGGTGGCAGGCCTGCCATGTGGTGGGAGGGTCGACCGGACTCATCCCCAGCCAGTTCCTGGAGGAGAAGAGAAAAGCTTTTGTGCGACGAGATTGGGAAGGCTCGGGAGTCCTGTGTGGAACGATGAccgggaagaagaagaaaaagatgatGTATCTCACGGCCAGAAATGCAGAGTTTGACCGCCACGAGCTGCAGATCTACGAGGAGGTCGCCCGGATGCCCCCCTTCCAGAGGAAGACCCTGGTGCTGATTGGGGCGCAGGGGGTCGGCCGCCGGAGCCTGAAGAACCGGCTGATCGTGCTGAACCCCACAAGGTTCGGAACAACGGTGCCCTTCACCTCGAGGAGGCCGCGGGAGGACGAGAAGGACGGGCAGTCGTACCGGTTTGTGACGAGGGTGGAGATGGAGGCGGACATCAAAGCCAGCCGGTACCTGGAGCACGGAGAGTACGAGGGCAACCTGTACGGCACCAAGATCGACTCAATCCATGAAGTGGTGGAGACCGGGAGGACGTGCATCCTGGACGTGAACCCTCAGGCTCTGAAAGTCTTGAAGACTTCGGAGTTCATGCCGTACGTGGTGTTCATCGCCGCCCCGGAGCTGGACACGCTGCGGGCGATGCACAAAGCCGTGGTTGATGCCGGCATAACTACCAAGCTTTTGACAGACACAGACTTGAAAAAGACGGTGGACGAGAGCGCTCGGATTCAGAGGGCCTACAGCCACTACTTTGACCTGGCCATCGTAAATGACAATCTAGACAAAGCCTTTGAGAAACTGCAGGCTGCGGTGGACAAACTGCGCTCGGAGCCCCAGTGGGTCCCCGTCAACTGGGTCTACTGAGGGCCGGCCGCGGGGGTCCGCAGGGCGGGGTGCGGAGGACGGACCCCCGGAGGATGTGCGGACCTCCCACCCCCCGACTCCCTGGTACACTGCGATGACTTTTTCTACACAAATTGAAGGGAAagtgtacttatttattttaatttttataactttttacAGAATCTTTCTATTCATATCGACTAAGTAAAATCACGACCACGACGACAAAGACGACAAAACCGgagccatgttttttttttttttttgttcgtttgtttgttttgtaccaCAATTGGGCCCAACTGAACCTGAAATTGTGATCCGACAAAAGGACGAGACTGCTTGAgagattttaatgtatttattcagaagTCCGAGATGCTCAGAAGCAATTGCTCATCCTGAGGTGAGACACTACTCTTCATTGACATAAATGAATCGtatcattaataacaataataacaacgaGTTTCTCAACAGAGAAGTGTTTACATGCTAGCAATACCACAGTAATTGCAACGCCACTTTTTGTTAATGCTCTGTGTGAAATGTGACCgtaggttttcttttctgttcgcCATCGTGTTTTTCTCATTTCCTCCTTaggatatctctaaataaaccCCCAGTGTAATCCCATTTGACACCCAGCTGCTTTGAAACCGCTGTAGttacttttaaattgatatCCATTAATAGTGGAATCGTAGTTTTTAGCTTCATTTTCTGAGAGGCGAGAGCTATATCTGTACCCCTCGAGAATATTAAAACcccgtctctgtctgtctctgtattttctGTTGGTGATTTTAGTTGATAGGTTTTAGGAAGAAAATAAGTTTGTGTTATTTCGATTTTTAAAGTagaatttttgttttgcttctacTGTTCTAAAAAAGAATGTTCCTTGAAGAACAAAGTGCATCCGGAATGTTTCTGCTTCTGATGCGACAtattgtgattgtgtttgtttttcttcccgtATTCTGGAAGTTTGGCGTGTGTGCTTGACGGCTGACTGAAAAGACACTGAAGGATCCtgggatgtttaaaaaaaaaaaaaatggtgtccATTGACACTTGGGAGCAGCTGTGAACCCAGTTTGTTTTTGGGGCGTCTTATACTCTGAAAAATACCAGTAAGAGTTCTCCATGTAGAGCTCTTACTGGTATTTTTCGATATTAACTTCTGCTGTATAAATTCTGAAGTTCCCTTGCATTTATCCCGAAAATGAACTTCAATAAGTAGGCAATCGAAGGATACCCAACATccctttttttacttttacattccATCACTAGTCATTTAGTTGTTGACCAACCcctggggaaagaaaaagtaCTCGTTTAGTGGTGTATGGCTGAGTTGTGtagcattgtgttttttttttcagcagcacAAGCatggtacaaaaataaatattctgtcAAGACCCCCCAGGCAGTTTGCCTGTGTCAACAAAAGCGATTAAATGCGGAAGTGGCCCCTACTGTCTCATCGCAAACCTCCATGTGTCCCCTAACCATTATGATGTGTTTCGAGTAGTattccctcccccccaccctacACTTAAAACAAGGAATGGTGCTGCTTTTCCCGACATTACTTtataggaaacaaaaacactttggtGTAAGGGGGGGGGAAAGGACTGTGCCATATCTTATTGTACATCGTGAATCGGCCATGGGTCTGTTTGGTCCACGATCTCTAACACTGCCATCACAAATAAAGTTcagtatataaatatctatattaatA

Function

symbol description
mpp6 Predicted to be involved in maturation of 5.8S rRNA. Is expressed in organism. Orthologous to human MPHOSPH6 (M-phase phosphoprotein 6).

NR:

description
PREDICTED: MAGUK p55 subfamily member 6-like isoform X3

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021625 True 4009 mRNA 0.50 17 23213371 23253206

Neighbor

gene id symbol gene type direction distance location
AMCG00021626 NA coding upstream 9956 23186272 ~ 23203415 (+)
AMCG00021624 NA coding upstream 33198 23168581 ~ 23180173 (+)
AMCG00021623 NA coding upstream 46859 23156879 ~ 23166512 (+)
AMCG00021618 NA coding upstream 120503 23089532 ~ 23092868 (+)
AMCG00021611 NA coding upstream 124466 23083300 ~ 23088905 (+)
AMCG00021628 LOC103364058,LOC106950171,LOC107743218 coding downstream 90684 23343890 ~ 23369320 (+)
AMCG00021633 NA coding downstream 216826 23470032 ~ 23480552 (+)
AMCG00021632 NA coding downstream 229749 23482955 ~ 23488208 (+)
AMCG00021631 NA coding downstream 253493 23506699 ~ 23513738 (+)
AMCG00021638 NA coding downstream 526564 23779770 ~ 23782827 (+)
G87233 NA non-coding upstream 15502 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 21618 23145004 ~ 23191753 (+)
G87168 NA non-coding upstream 198540 23007394 ~ 23014831 (+)
G87091 NA non-coding upstream 584485 22628620 ~ 22628886 (+)
G87086 twist1 non-coding upstream 624446 22587214 ~ 22588925 (+)
G87288 NA non-coding downstream 235875 23489081 ~ 23584336 (+)
G87313 hoxa3 non-coding downstream 420686 23673892 ~ 23678603 (+)
G87321 NA non-coding downstream 434119 23687325 ~ 23692148 (+)
G87402 NA non-coding downstream 776638 24029844 ~ 24032117 (+)
G87423 LOC103376870 non-coding downstream 827530 24080736 ~ 24139508 (+)
AMCG00021602 NA other upstream 502227 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 922230 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1956182 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1977291 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1980518 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 921197 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 930002 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1656678 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2023570 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 2499151 25752357 ~ 25753253 (+)

Expression


Co-expression Network