AMCG00021627


Basic Information

Item Value
gene id AMCG00021627
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23254939 ~ 23262180 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021627
GGCGGGCCATTGGCGTGCTTTTAAAAACGACGGGAGGAGAGGCCACTTTATTGGCGCTATAACTTCCACAGACAGAGGTAGCGAAACAAAGAGCGTGTACTGTCCTTCTGACGCGGGGTGACGTCACGGGCCGGCGTGTTTGATCTGAGAACCTGGTCGGTAATTAAGCTGAGAGTGAGAGGCGTCGTCATCCATAATTGAACCACCGCAACTAAAGCCAACACCTGCTTCATCACAGAAGTGCCCACCATCACGGCATCGCGGCTAATTCATTACCTTAAGTACAATATACTGTAAGGTTCTTTATCTACCCAAAGATGTTCGGCAAAGCCACCAGCAACTTTGTGAAACAGATCGACCCGGACGGGTGCCTGATTCCCATGTCCCGCCTGAATGACTCGTACGGGATGCAGCCCCTGGCCCTGGTGGTGAAGCGCACAAGGTTCTGGTTCTGGCAGAAGCCGAAGTACATCTCGTCAGACTTCACCCTGAGTGACGTGCTTTCTGGAGACGAGCCTATTAAACCCGAGGTCGTGGAGTCCGATTTCCTGAAATACGAAGGCACGTTTGGAGACAATCTGTCAGGGAAACTGGGGACTGAACTTGGGCAGTTGAATCTCAACGTTGAGGGGAAAGGGTCTTCCAAGCTGCAGTCCTCCTTCGGGAACTTAAAGAAGCGGGAAGTGGACCTCCAACAGCTGCTGCTCACCTCAAAGGGCAGGCGAACCCGAGAGAAGAAGAACGAGGTGTTCGCTTTGGTGAAAGAGAGCATCTTCACGACTCAGCAGTGCTCCATCATTGAACAGGTCCAGGAGCAGGAGCAATGCGCTGGGATTCTGGGCTTCAAATCCAGCAACATTACGATTTCGGTAAACGAGAACGGCAACTACCAATTAGACAGCAACGTTGTCCTTGAGATCCCACCACAGACTGTCCTAGCTTACAGCGTCATTGAGCTGAATGTGAAACCCAGTGGAGAGTACGGGTTGTGCCTGCTGCCGGACACTCATGGGGGCTTTGAGGCAGAGAGCAGCGGGGGGCCGCCGACGGGGCTGCTGCTTTCCCAGGTGGACGGTCCCAGGAGAGACGCCCCGGCGCGGCGGACGGTCCCCAGCAAAGCGCCACTCACCGTGCTGAGAGAAGATCTGGAAGGATTTCAGCCCATTTTCCAGCCATTTGCGGAGCTGCCAGAGGCGAAGCAGTCCGAGTTGTTCGAGGTCCTGAGCAAAGTCGTGTCCGATAGATTGCTGATCAGCGGAGTGGTGGATGTGCTGGATCAGCTGTGCAGCGGTGATGGCCAGGCGCCGGCCAATCTGGACAACCTGTGCCCCTCTCAGAAGCGCAGCGCCACTGCCCTGCTGGAGGCCATGGGGTCCGGCCCGGAGGAGACGGACGGGACCCGGGGATCCTCTGCGCTCCTCGCAGCCACACACCTGCTGGTCTGTGCCCTGGAGGGAATGTCCGATGCTGCTCTCGTCGTCCTGAGCGGCTGCTTTCATCCTCAAATGCTCCAAGCCCTGCAGCATCTGATCCGTAGCTTCACCGTTGCCAGGACGTGTCCGCTGAGCAGCGCAGCCGCAGCACCACTGAGACACAAGGAATTCCTCCAGACTGTCCAGCGGCTATTCTCCTCATCCAGCGTTGTGGTCCAGGAGGAGCAAGCGGAGCTGAGAGCCACGACGGGGCAGCAGCCTGGGTTCCTGCCCCTGCTCCTGTGCATCAGCGTGAACGGGCTGGCGGCCCTCCGCACGGGCCCCTAGGCACAGGGCCTGGACCCTGGTCCCAGAGCGAAGTGGGGCACGGGGATCGTGAGCGAGTTCAGCACGTCCTGCTCTTGAGAGGCTCGGTAGTTGGAGCGGCATCTTTTCTGAAGCACAAAGACAGACTTCTTTCTAAAGCTAGTTAGGGTTCCAGGAGAACGCTCTGCTGGGCCTTTATATTGATGCTACAACActtttatacactcacctaaaggattattaggaacacctgttcaatttctcatt

Function

GO: NA

KEGG:

id description
K22146 DFNA5; non-syndromic hearing impairment protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021627 True 2006 mRNA 0.57 11 23254939 23262180

Neighbor

gene id symbol gene type direction distance location
AMCG00021621 tra2a,LOC107688335 coding downstream 102618 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 127462 23127220 ~ 23127477 (-)
AMCG00021620 igf2bp3,LOC108273237 coding downstream 145188 23096480 ~ 23109751 (-)
AMCG00021614 NA coding downstream 187200 23061533 ~ 23067739 (-)
AMCG00021615 fam126a,LOC107667581,LOC107570921 coding downstream 206096 23026312 ~ 23048843 (-)
AMCG00021629 NA coding upstream 3570 23265750 ~ 23303746 (-)
AMCG00021637 NA coding upstream 404413 23666593 ~ 23667210 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding upstream 409245 23671425 ~ 23673576 (-)
AMCG00021636 NA coding upstream 415651 23677831 ~ 23685846 (-)
AMCG00021639 NA coding upstream 435464 23697644 ~ 23698829 (-)
G87234 NA non-coding downstream 57096 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 148751 23093588 ~ 23106188 (-)
G87203 NA non-coding downstream 163828 23089602 ~ 23091111 (-)
G87193 NA non-coding downstream 178924 23075634 ~ 23076015 (-)
G87181 NA non-coding downstream 240157 23007394 ~ 23014782 (-)
G87269 NA non-coding upstream 109010 23371190 ~ 23372192 (-)
G87282 NA non-coding upstream 171036 23433216 ~ 23481900 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding upstream 220792 23482972 ~ 23488212 (-)
G87427 NA non-coding upstream 814719 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 818556 24080736 ~ 24133311 (-)
AMCG00021619 NA other downstream 93948 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 1583624 21666402 ~ 21671315 (-)
G86808 NA other downstream 2171369 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2530059 20721884 ~ 20724880 (-)
G86649 NA other downstream 2857156 20395612 ~ 20397783 (-)
AMCG00021630 NA other upstream 67145 23329325 ~ 23332968 (-)
G87263 NA other upstream 76071 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 232845 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 937356 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 1080720 24342900 ~ 24363459 (-)

Expression


Co-expression Network