AMCG00021630


Basic Information

Item Value
gene id AMCG00021630
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23329325 ~ 23332968 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021630
ATGAGAGTCGCATCTTCCCCAGAGGACCACCCATTCAGAGAGCAGTACCCTCCTGTAGTGGAGAGGGGACAGCGGCACTCCAGCTATGGACCAAAGTCCGAGAGTGTTGCCATACAGCAGTATTATGATCTAACATCTTTGAAGAAAATCCTCGTCCGCATGAATGATGAGCTTGAAAAGCAGATCCAGCTCCCATTTCCCGCAGAGCATCCCTACCAGTCGCACATCTCTCGTTTTGCTTTGTTTCCGAGCCTGGGGTCTCCTGACGACTTGACCTGCGGGGTCCGCGCTGCCGCCCGCCTGCCCCTCAACCCCCTCGCCCCGGCTGGTGGCTATGACATCACTGTGCTCAGCAAGACAAAGGGTGGTCCTTACCGGCATGAACGAGTTGACCTCTCGACGAAGAAGGCTCTGAACTGGCCTGGACAATATGGCTATTATCAGttcCCTAAGTCGAGTGAGGGGTTCGGTCAGGTCTTTTATCCCAGTCCACCGAAGACTATAGTTCCTAATACGGTCCTGAGACCCTGGGACAAGACACTGTCCGAAAAGACGGCAAACACGGTGAGGAACCTGGAGAAGTCCCACTGGCTGACCTCCTATCAGCTGAGTTACACAGGAAATGGGCCCATGAACCCGGTACAGCTAGATGATTACCAAGACAAGATGATCAAAACTATTTCTGGGGAATCGAATCTGTTTGCAGCCCAACTGAGGGAACAGTCCCACCCTGTGTTCTCGCCCCCTCGCCCTCTAGAGGGCTGCCACTCCAGGGTCCAGCCGGGTCGGCGTGCTGTCTCTTGGTCAGACCGTGACCGAGGCCCCACCCACCCTGCCGGCCATGAGGAGCCTGGCAAGTTACACAACAAGAGCGTCTTCAAGCGGGAAACAGACGACACAAACCTAGATCAAGACCTGTTCTCGCAGCGGACGGATCCCAGTCGTGTGAATTGCCTCTGGTCAGAGCCCTGTGAAGCCCGTGGCTGCAGTGAGGGTTATAGGAGGACAGATATTCCTCAGGGACAGGAATTCCCCAATGACTGTCCTGAGGCTCAACCAGAAAAGGGATTAACTTTCAAGATCACAGACACCCCACACGACACCTGTCCACCTCAGAGTGGACCCCGTCTCTTCCCCGAGTACAGATTGAGGACCGCGCACCCCCACGTACCACTGAGAGGCAACGCTCTTGAGGGGCAGCATGTGGGAAAGCCCCGGCCTGGGTCTGCACTCCTGGAGCTGCAGGACTCCTACTCCAGGTCCGACGCACACAAGAGGCTCCACGAGTCGCTCACTGGGAACGCGGCAGACCTCCGGGACAACGCGCATTCTGGGAGGAGACACAAGTTCTTCGGCTTCAACTCTTATTATTTCCACAACTGA
>TU108931
TCCCAAACATCTGGATGGATGTGattcattgttttttcccctgccTTAGAGGGAACAGTCCCACCCTGTGTTCTCGCCCCCTCGCCCTCTAGAGGGCTGCCACTCCAGGGTCCAGCCGGGTCGGCGTGCTGTCTCTTGGTCAGACCGTGACCGAGGCCCCACCCACCCTGCCGGCCATGAGGAGCCTGGCAAGTTACACAACAAGAGCGTCTTCAAGCGGGAAACAGACGACACAAACCTAGATCAAGACCTGTTCTCGCAGCGGACGGATCCCAGTCGTGTGAATTGCCTCTGGTCAGAGCCCTGTGAAGCCCGTGGCTGCAGTGAGGGTTATAGGAGGACAGATATTCCTCAGGGACAGGAATTCCCCAATGACTGTCCTGAGGCTCAACCAGAAAAGGGATTAACTTTCAAGATCACAGACACCCCACACGACACCTGTCCACCTCAGAGTGGACCCCGTCTCTTCCCCGAGTACAGATTGAGGACCGCGCACCCCCACGTACCACTGAGAGGCAACGCTCTTGAGGGGCAGCATGTGGGAAAGCCCCGGCCTGGGTCTGCACTCCTGGAGCTGCAGGACTCCTACTCCAGGTCCGACGCACACAAGAGGCTCCACGAGTCGCTCACTGGGAACGCGGCAGACCTCCGGGACAACGCGCATTCTGGGAGGAGACACAAGTTCTTCGGCTTCAACTCTTATTATTTCCACAACTGACACGGCTCCTGGTCTGATAGATTGTCCTCTGAAGATTGTGTTTGTGAGGAACTCCAAGTTTTTGAATCTGATTTCACATATTCTCAGCTAAACCCCAGATAATCCACTTACTtacaatttttgttttgggCAATTTGATCCTAGACCCTAGAACTAATCTCTGACCATTTTTACAGATCTTTATCTTTATTGAATACCTTCTCTCATCACTTTACCTTGCTCTGATAATGACTCATTGTAAGACAGTTGGGGACATAAAGGAAGATAAacctttgctttattttcaaacttgcaaaaataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021630 True 1383 mRNA 0.56 7 23329627 23332968
TU108931 False 1020 lncRNA 0.51 1 23329325 23330344

Neighbor

gene id symbol gene type direction distance location
AMCG00021629 NA coding downstream 25579 23265750 ~ 23303746 (-)
AMCG00021627 NA coding downstream 67145 23254939 ~ 23262180 (-)
AMCG00021621 tra2a,LOC107688335 coding downstream 177004 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 201848 23127220 ~ 23127477 (-)
AMCG00021620 igf2bp3,LOC108273237 coding downstream 219574 23096480 ~ 23109751 (-)
AMCG00021637 NA coding upstream 333625 23666593 ~ 23667210 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding upstream 338457 23671425 ~ 23673576 (-)
AMCG00021636 NA coding upstream 344863 23677831 ~ 23685846 (-)
AMCG00021639 NA coding upstream 364676 23697644 ~ 23698829 (-)
AMCG00021641 NA coding upstream 376233 23709201 ~ 23710134 (-)
G87234 NA non-coding downstream 131482 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 223137 23093588 ~ 23106188 (-)
G87203 NA non-coding downstream 238214 23089602 ~ 23091111 (-)
G87193 NA non-coding downstream 253310 23075634 ~ 23076015 (-)
G87181 NA non-coding downstream 314543 23007394 ~ 23014782 (-)
G87269 NA non-coding upstream 38222 23371190 ~ 23372192 (-)
G87282 NA non-coding upstream 100248 23433216 ~ 23481900 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding upstream 150004 23482972 ~ 23488212 (-)
G87427 NA non-coding upstream 743931 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 747768 24080736 ~ 24133311 (-)
AMCG00021619 NA other downstream 168334 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 1658010 21666402 ~ 21671315 (-)
G86808 NA other downstream 2245755 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 2604445 20721884 ~ 20724880 (-)
G86649 NA other downstream 2931542 20395612 ~ 20397783 (-)
G87263 NA other upstream 5283 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 162057 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 866568 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 1009932 24342900 ~ 24363459 (-)
G87674 NA other upstream 2070682 25403650 ~ 25406538 (-)

Expression


Co-expression Network