AMCG00021631


Basic Information

Item Value
gene id AMCG00021631
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23506699 ~ 23513738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021631
CAGAATTTCTATTTCGCCTGTTTCTTTAATCTCAGCTATATCTGCCCACTCTGTATGTGGAAACTGAGCCGTGAGAGATGTGGCATGGTATACAATGCCATACCATGTGCACCCTGAAAGAAATGACaacaaactgtacattttacagaacaacTTTATTTGAAGGTGAAATCAATGTGTTTGGCGGTGGGGGGAAGAATTATGCTTCTAAAATAATCCCTTGTTATTTGTAGTGGGTTAGATTGTTCCAACAACACACAGTAATGCTTTTTAGTCAGTTTGATCATTCACATGCTGAATTATTGATGCATCTTCTCCCACCTGAAGAGTCATCTTCTCAACATACCTTTAGTATAGTGCTGTGTACTTGTTATGTGTgacatcattattttgcattcctCATGTTGTGTAATTACTCAAAATGAATTGCTAATCTTTCATTCTCTTTTGATTTACAGATCTATTTAGATAATGGGGGACATGCTTGATAACCATGTGAAAAAGGTATGTATTTGTGAAGCTGTTGGTAGGCTTTACATCTGTACCTCTGTCTTCAGTTAGACTCCTCTGAGCTCGGCGCTGGTCATGGTGGtgccCTCTGCTACGAACTCTGAATCTCTACAAGGAGTTTCTTCAGTCTCTACTCCACAGAAGACCCTTTACAAGCTGaatatctgtcttttcttgCCGTTTCTACAGGAGTTTGTCAATGTTTGGGTGAGGGACCCGAGAATCCAGAAAGAAGACTTCTGGCATTCCTATATAGATTATGAGATCGGTTTACATACCAACAGTATGTGCTTCAGGAAGAAGACCTCGTGTGTCAGGAGGCGCTACAGTGAATTTGTGTGGCTGCGGCAACGACTTCAAAACAATGCCTTGTTAATAGACTTGCCTGAACTTCCCTCCAGAAACCCGTTCTTTAGTTTGAATAACACCCAGCAAATCGAACAGAGGATGGAGGGTCTGCGGATATTCCTTGAAAAtatttcacagaaCACCCTGCTCCTGTCCGACAGCCGGCTGCACCTCTTCCTCCAGTCCCAGCTGAGCATCGCCAGCATCGAGGCCTGCGCTTCGGGGCAGACCAAGTACACGGTGGCTGAGGCGATCCAGCGCTTCAGTGGCACGAACCGCAGATTCCCCCTGGAAGAAGAGGAATACGAGGACAAGTGTAAAGCCTACTCCGACTCGGACTGCGAGAGTTCATCCTCGGGGCTGGGGCACAGCAGCGATGACAGCGCGCCACGagactgcaaaacaaaagcaagtcaGGGGGAACTCTTCAGCTCGCTGCCCGCCTCTCCTTCTGAAGAGCAGCAAGTGCAACCGTAAAATAACAGTATTCACCAGAGCGCGGAGGACAGAGCTGAGCTGCTAATCTCTGCATTCATTCCAGTCCAACAAAAGTGCCTTGTATACCAGGGACCTGGCCAGAAAGAGACGGCCctttgaattgtgtgtgtttattttggagaGTATGTTGATATTAGGGGGAAAAGGTGACCTAATACCAATTCATACGGCTACAATGTCTCTGGCTCATGTTTAATGTGTGAAGTGATTGTTTTGATTGCATAGTATTTGACATTAcaaaactctcacacacacgacACTGTATTCACTTTAGTAACATCTTGATGATAACACTATCTCTCCAGGAGAGTTCAATTATACTTCAACAATGCGttactgtataaataaagttttagctgctttttgttttgttttggttgtttaaatggaaattgtgtCGGTCTACTgcaatttcaatatttatttatttttacagctgtgAGGTTGTAATATAACGCAAAATTATAGTGTTGATGATCTGAGATTAGGTAGATagctaatacattttcaaattaaatgaaattagtTCTAAAATAAAGTTTAGGTCAGTTGAAAGAGACTCCAAAACCCAATTTATTGTAATCCTTTAAGCAAAAGTGCATACCTCTACCAATTCCCCAAATACTGCcagtataaatgtatttaatagacTGAAGATGTCTCACTGTAAGGACATTTTGTAATTCTTAATATTAAAACtactacagaaaaaacaaaatactcgAGGTTCCAGCCTACAACCGTTTGGAAAATATGATGTTGCACAATTGAATCCAAACTGTAGTGCATTAGGATCAAACGCACAGCTTCCTGTGTCGGGCGTGTGCAGTTTGACTCATTGCActggaaatgaaatgtaaatcacTGGAAAACGCAGCTGCTTCATAAAGTTAAAAAGTGACCACGGCGCAGATTCATGTGGGAGATGCAACTTGATTATAATCCTAGCAAATACTGAATTGTTGCATTATGTTTTACCTCCCCAGAGAAGCCAGTACTTTTGTGTCTGTCGCATTAGAAAAGTAACGCACATTGaaactattatttgttttttaatattttgttttgggttttaaatATCAGTAAAGTGGCATGTGATGTCTTTTTCcccatgtatgtgtgtttatacatgaatgtatttgtatgtttcaaTTCAAACCACACTGCACGGCCCACTGTGTTGTCTGCTCGACCTGCATCGCAGTCACAATGCAGCCTTCATGGGGGATAAAGGTAACTTTCAGTTAAAAGTGCACACTTCGCGTAATTACTCTGTCGAGTGGCTAAAACTGCCAACTTCaataaaattgtttttctaaata

Function

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0061512 protein localization to cilium biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021631 True 2678 mRNA 0.41 6 23506699 23513738

Neighbor

gene id symbol gene type direction distance location
AMCG00021632 NA coding upstream 18491 23482955 ~ 23488208 (+)
AMCG00021633 NA coding upstream 26147 23470032 ~ 23480552 (+)
AMCG00021628 LOC103364058,LOC106950171,LOC107743218 coding upstream 137379 23343890 ~ 23369320 (+)
AMCG00021625 mpp6,LOC106570530,LOC106588853 coding upstream 253493 23213371 ~ 23253206 (+)
AMCG00021626 NA coding upstream 303284 23186272 ~ 23203415 (+)
AMCG00021638 NA coding downstream 266032 23779770 ~ 23782827 (+)
AMCG00021645 NA coding downstream 340181 23853919 ~ 23883152 (+)
AMCG00021648 creb5,LOC107550799 coding downstream 442191 23955929 ~ 23974179 (+)
AMCG00021651 LOC106537063,LOC106517749 coding downstream 507127 24020865 ~ 24029573 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding downstream 615261 24128999 ~ 24135047 (+)
G87233 NA non-coding upstream 308830 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 314946 23145004 ~ 23191753 (+)
G87168 NA non-coding upstream 491868 23007394 ~ 23014831 (+)
G87091 NA non-coding upstream 877813 22628620 ~ 22628886 (+)
G87086 twist1 non-coding upstream 917774 22587214 ~ 22588925 (+)
G87313 hoxa3 non-coding downstream 160154 23673892 ~ 23678603 (+)
G87321 NA non-coding downstream 173587 23687325 ~ 23692148 (+)
G87402 NA non-coding downstream 516106 24029844 ~ 24032117 (+)
G87423 LOC103376870 non-coding downstream 566998 24080736 ~ 24139508 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 702636 24216374 ~ 24218824 (+)
AMCG00021602 NA other upstream 795555 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1215558 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2249510 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2270619 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2273846 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 660665 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 669470 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1396146 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1763038 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 2238619 25752357 ~ 25753253 (+)

Expression


Co-expression Network