AMCG00021638


Basic Information

Item Value
gene id AMCG00021638
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23779770 ~ 23782827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021638
atggaaaacagaaagGAGATGGTAATGTTCATGGAGGGAGGTCAACTTGGCACGCTAGTTGGCAAGAGAGGGTCCAATTTGTCAGAAGCAGTTGGGAGCCCAGTTCAAGAACCACAGGACAAGATGGTCCACAGGAACTGTCTGAGCCCCAGGTCTGTGCCTTTATCGCGGGAAAGAGGGGacgaggaggaggtggaggaggtgAGGAGCGGCGTCTGCAGCGATATAAGGCCGGGTGGACTGGTGTCTCCTCCGGGTAGACCTCAGTCGGACCTGCTCTCCAACAAAGGGCATCACAGCAGCTCTGACACCGAGTCTGATTTCTATGAAGAAATAGATGTCAGCTGCACACCGGACTGTACGTCTGGAAGCATGGATTATCCCAACAGCAAagGTCAGCCTGGCGGCTCTCCCAACGCCAGCTCAGGGACCCACGGCGATGCTGGGAAGGTGAGCGGCTCTCACGGCTCTCTGGCCTGCGGGGCGGACCAAATGCGGCGCTACCGGACGGCCTTCACTCGGGAGCAAATCGCCCGGCTGGAGAAAGAGTTCTACCGGGAAAACTATGTGTCCAGACCCCGGAGGTGTGAACTTGCTGCGGCTTTAAATTTGCCAGAAACAACTATAAAGGTGTGGTTCCAGAACCGACGGATGAAGGACAAACGGCAGCGCCTGGCCATGACCTGGCCTCACCCTGCGGACCCCGCCTTCTACACCTACATGATGAGCCACGCAGCGGCCACCGGGAACCTGCCCTACCCCTTCCCATCCCACCTGCCCCTGCCCTACTACTCGCACATGGGTGTGGGGGCTAGCTCGGCGTCGGCGACTCCTTTCACCAGCCCCCTGAGACCCCTGGACACGTTCAGGGTCCTGTCTCACCCGTACCCCAGGCCGGAGCTGCTCTGTGCTTTCCGGCACCCTTCTCTGTACCCCACCCCCGGGCATGGACTGGGCAGCGCAGGGGGCAGCCCGTGTTCCTGTCTCGCCTGCCACGCCGGCCAGTCTAACGGGTTGTCCCAGCGGTCTGCGGGGACGGACTTCACCTGCTCCTCCACCAGTAGGACTGACACCTTTCTGACCTTTACGCCTTCTGTGTTGAGCAAATCCTCCCCGGTCTCTCTGGATCAGAGAGAAGAAGTACCTTTGACCAGATAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021638 True 1158 mRNA 0.60 3 23779770 23782827

Neighbor

gene id symbol gene type direction distance location
AMCG00021631 NA coding upstream 266032 23506699 ~ 23513738 (+)
AMCG00021632 NA coding upstream 291562 23482955 ~ 23488208 (+)
AMCG00021633 NA coding upstream 299218 23470032 ~ 23480552 (+)
AMCG00021628 LOC103364058,LOC106950171,LOC107743218 coding upstream 410450 23343890 ~ 23369320 (+)
AMCG00021625 mpp6,LOC106570530,LOC106588853 coding upstream 526564 23213371 ~ 23253206 (+)
AMCG00021645 NA coding downstream 71092 23853919 ~ 23883152 (+)
AMCG00021648 creb5,LOC107550799 coding downstream 173102 23955929 ~ 23974179 (+)
AMCG00021651 LOC106537063,LOC106517749 coding downstream 238038 24020865 ~ 24029573 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding downstream 346172 24128999 ~ 24135047 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding downstream 369237 24152064 ~ 24172881 (+)
G87321 NA non-coding upstream 87622 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 101167 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 195434 23489081 ~ 23584336 (+)
G87233 NA non-coding upstream 581901 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 588017 23145004 ~ 23191753 (+)
G87402 NA non-coding downstream 247017 24029844 ~ 24032117 (+)
G87423 LOC103376870 non-coding downstream 297909 24080736 ~ 24139508 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 433547 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 478135 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 576677 24359504 ~ 24360909 (+)
AMCG00021602 NA other upstream 1068626 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1488629 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2522581 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2543690 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2546917 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 391576 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 400381 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1127057 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1493949 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1969530 25752357 ~ 25753253 (+)

Expression


Co-expression Network