AMCG00021640


Basic Information

Item Value
gene id AMCG00021640
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23711509 ~ 23720100 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021640
ATGAGTTCTTCTTATTATGTGAATAGTCTTTTTAGCAAATATGCGGCGGGGACTTCCCTGTTTCCCAATGTAGACCAGTCCTCCTGCTCTTTCGCACCCGGCGCTCAGAGAGCCGCATATGGACCGGGGACAGCCGCCTTCTCCTCGTCTCTACCCGGGCTCTACAGCGTCAATAATGCCATCTACCAGAACCACTCGGTGTTCACCTCCGGGTACAACCTGGGCTCGGACGCCTACAACCTGCCCTGCAACTCGTTTGACCAGAACATGCCCGTCCATTGCAACGACCTGGCCAAAGGCAACTGCGACAAAACGGACCCCCTGAGCATCCACTCTCAGGCTGATAGCAATCTCCGGATGTACCCCTGGATGAGAAGTTCAGAAACAAACCTTGGACGACCACTAATAGTTATAGCCAgatgtacaaacacacaacaaatcaCAATAGTACAGTTTGGGGAACAAATGAGTTCGTTTTTTGTGAACCCCGTGTTCCCCGCGTCCTTGCCCAGTGGTCAGGAGTCCTTCCTCGGACAGATGCCATTGTATACATCTGGCTATGATGCTCTAAGGCACTTTCCAGCTTCCTATGGCACGTCTGCGATACAGGACAAGACTTATCCATCACCGTGCTTTTATCAGCAATCCAATACTGTGCTTAATGCAAGGGTACCCTATGAGTCCGGGCCGTCCTGTTACCCTCCGGAGAAGGACCCAGCAAACCCCTACAGCACCGGCAGTGGCAAGCAGAAGGCATGCAACCAGTATGGACAACTTAACGTCAACCAAGAGTTTAAATCCGACTGTGCTCAAAACAAAATCTTCTTTAATGAGTCCCCGGACCGGAAGTTCCCTTCCTCCGTTTATCCATGGATGCAACGCATGAACTCTTGCAATGgGTCGTTTTATGGAACACATGGGAGGCGAGGGCgccagacttattccagatACCAAACTCTGGAGCTCGAAAAGGAGTTTCATTATAACAGATACTTGACCAGACGTCGCCGGATAGAAATTGCCAACGGCCTTTGTCTAACGGAACGACAGATTAAAATATGGTTTCAAAATCGGCGcatgaaatggaaaaaggagAACAAGATTTTAGGCACCACACAGGAAAATAGccaagaagaagagaaagaaaaagctgcGAAATCATAG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021640 True 1164 mRNA 0.49 3 23711509 23720100

Neighbor

gene id symbol gene type direction distance location
AMCG00021641 NA coding downstream 1375 23709201 ~ 23710134 (-)
AMCG00021639 NA coding downstream 12680 23697644 ~ 23698829 (-)
AMCG00021636 NA coding downstream 25663 23677831 ~ 23685846 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding downstream 37933 23671425 ~ 23673576 (-)
AMCG00021637 NA coding downstream 44299 23666593 ~ 23667210 (-)
AMCG00021642 NA coding upstream 4361 23724461 ~ 23727144 (-)
AMCG00021643 NA coding upstream 12342 23732442 ~ 23742554 (-)
AMCG00021644 hoxa13b,LOC105018810 coding upstream 36776 23756876 ~ 23758021 (-)
AMCG00021647 hibadh,LOC107744697,LOC107596727,LOC107550829,LOC107685537,LOC107743154 coding upstream 93872 23813972 ~ 23824776 (-)
AMCG00021646 hibadh,LOC101062690,LOC106570522,LOC108441516 coding upstream 124571 23844671 ~ 23848491 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 223297 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 229609 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 339317 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 513666 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 605321 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 356799 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 360636 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 558537 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 825982 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1267342 24987442 ~ 24989739 (-)
AMCG00021634 NA other downstream 212748 23495025 ~ 23498761 (-)
G87263 NA other downstream 373025 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 378541 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 550518 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2040194 21666402 ~ 21671315 (-)
AMCG00021662 NA other upstream 479436 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 622800 24342900 ~ 24363459 (-)
G87674 NA other upstream 1683550 25403650 ~ 25406538 (-)
G87806 NA other upstream 2185344 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2371127 26091227 ~ 26105391 (-)

Expression


Co-expression Network