AMCG00021643


Basic Information

Item Value
gene id AMCG00021643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23732442 ~ 23742554 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021643
ATGGATTTTGATGAGCGGGTTTCTGTGGGCTCTAACATGTACTTACCCAGTTGTACGTACTACGTCTCCGGTGCTGATTTCTCCAGCCTCCCTTCCTTTTTACCCCAGACCCCGTCTTCTCGCCCCATGACGTACTCCTATTCATCTAACCTGCCCCAGGTCCAGCCTGTGAGAGAAGTCACCTTCAGGGACTATGCCATTGATGCATCCAGTAAGTGGCATCACAGAAGCAATCTCTCCCATTGCTATTCGGCAGAGGAGATCATGCACAGGGACTGCCTGCCTGCCCCTACCACCATGGGGGAAATGTTCGCGAAAAACAACTCCACTGTCTACCACTCGAGCTCCAACTCCACGTCCAATTTCTACAGCAGCGTGGGGAGGAACGGTGTGCTGCCCCAAGCCTTTGACCAATTTTTCGAGACGGCGTACGGGAACACAGAAAATCCGCCGTCCGACTACTCTGGGGACAAAAATGCCAACAAACTGCCTCCTGCCGCCGCCGTGCCGGGGTCTGATCCATGCAGGGAGACAGAGGCGAAGGAGCGCAGGGAAGAGAGCAGCAGCCCCGGGTCCTCTTCCGGCAACAATGAGGAGAAATCCAGCAGCACCAgtggCCAGCGTACTCGTAAAAAGAGATGCCCCTACACAAAATACCAGATCCGAGAATTGGAGAGAGAGTTTTTTTTCAGTGTCTATATTAACAAAGAGAAGCGCCTTCAGCTGTCAAGGATGCTCAACCTCACTGACCGGCAGGTTAAAATCTGGTTTCAAAAtagaagaatgaaagaaaagaaattgaACAGAGATCGAAAGGGCTATCTTCTCCCCTCGCCAAATTATACCACAACAATGTCATGCTCAGACAGCCCGGCTGGAAACTCATTTCTAGTAGACTCCTTGATCAGTGCCAGCCGAGCCGAAAGCGGTGGCGCCTACTATCAGGGCAGTGGCGTTTACTTGCCACCAGCTTCTGAGCTGCCTTACGGACTACCCAATTGTGGATTTTTTCCAGGATTAAGTAAACGGAGCGAGGCGAACTCCCAGAATATGGTTCCCACCTCCAGCCCGTACATGCCCGGGATGGAGGTATGGCTGGATCCACCGAGATCATGCCGCATGGACCCACCTGCGAATCAGCAGGTAGCGCCCTGTTCCTTCTCGCCGAGCATTAAGGAGGAGAGCGCCTATTGCCTTTACGAGTCGGAGAAGTGTCCAAAAGGGTCAACGGCAGAAGACCTGTCCTATTCAAGGCTAACATCTGGCTCCTGCGCCGTCAGTGAGGGCGGCACGGTTCCTGTACCTGGTTACTTCCGCCTCTCTCAGACTTATGCAACTTCAAAGGTGTATCACGGTGTTCAGTCGAGTTCGTCTCCGTTTGTCCTGCAACCGCCGGTCCGTTTCGAGACGCCGCCGTCGTCCGCTGCCTCTACAGAGACTGGCAGGAGAGGCAGTGAGGAGGCAGCCCCCAGCACTTTACCGTGCGTCCCccaaagagaggaggagaacagGGTCTCTTCGGCTGCAGAGGACTCCTCTCCAGACCCCACAGAGAATGGCAAAACAAGTCCCGACAAAGCGTCCAAAGAACATGATGTATAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021643 True 1602 mRNA 0.54 4 23732442 23742554

Neighbor

gene id symbol gene type direction distance location
AMCG00021642 NA coding downstream 5298 23724461 ~ 23727144 (-)
AMCG00021640 NA coding downstream 12342 23711509 ~ 23720100 (-)
AMCG00021641 NA coding downstream 22308 23709201 ~ 23710134 (-)
AMCG00021639 NA coding downstream 33613 23697644 ~ 23698829 (-)
AMCG00021636 NA coding downstream 46596 23677831 ~ 23685846 (-)
AMCG00021644 hoxa13b,LOC105018810 coding upstream 14322 23756876 ~ 23758021 (-)
AMCG00021647 hibadh,LOC107744697,LOC107596727,LOC107550829,LOC107685537,LOC107743154 coding upstream 71418 23813972 ~ 23824776 (-)
AMCG00021646 hibadh,LOC101062690,LOC106570522,LOC108441516 coding upstream 102117 23844671 ~ 23848491 (-)
AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding upstream 142738 23885292 ~ 23892646 (-)
AMCG00021650 NA coding upstream 191930 23934484 ~ 23942615 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 244230 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 250542 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 360250 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 534599 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 626254 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 334345 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 338182 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 536083 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 803528 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1244888 24987442 ~ 24989739 (-)
AMCG00021634 NA other downstream 233681 23495025 ~ 23498761 (-)
G87263 NA other downstream 393958 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 399474 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 571451 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2061127 21666402 ~ 21671315 (-)
AMCG00021662 NA other upstream 456982 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 600346 24342900 ~ 24363459 (-)
G87674 NA other upstream 1661096 25403650 ~ 25406538 (-)
G87806 NA other upstream 2162890 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2348673 26091227 ~ 26105391 (-)

Expression


Co-expression Network