AMCG00021645



Basic Information


Item Value
gene id AMCG00021645
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23853919 ~ 23883152 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00021645
CGACGGGGCTGTTGGCGGCGGAGCTGCGTCAGTAACGATTTGCACAGATAACTTGGGTTTGACTTCGTTTTCATAACGAAACAGTGAAAaccattattaaaaaagaaaatggcattcTTCCAAGAAGGCTCATCGCCCACCAGCACAATGGAAACATCCAACTTTGCGCATGTGATCTTTCAAAATGTAGGGAAAAGTTACATTCCTCACGCAGCCCTCGAATGTCACTATACTCTCACCCAGTACATCAAACCCCACCAGAAGGACTGGGTTGGCATTTTCAAGGTTGGCTGGAGTACAGCTCGAGATTATTACACTTTCTTGTGGTCACCTCTTCCCGACAACTATGTGGAAGGAACCTCGGTTAACCGTGTGCTGGTATTTCAAGGATACTACGTTCCAAATGATGACGGGGAGTTTTACCAGTTCTGTTACGTCACCCATAAGGGGGAAATACGAGGAGCCAGCACGCCTTTCCAGTTCCGGGCCAGCACCCCCACCGACGAACTGCTCACCATGGAGGATGAGAACAACTCGGACATACTGGTGGTGACGACCAAGGCGGGATTCCTGGAGCACAAAATCGAGGAAGCCAACAAGGAGAAACAAGAGTTACTGAAAGTGATCTCGGAACTAGAGAAGGAAAATGATCGGCTGCAAGAGGAGACTACGAAACTGGAGAAACTGTgtgaggaagagaaggagacCTGCGCCCAACTGAGGAAGGACTCCAAGGATCTGCATCATGCCTTGCAGGCACTTAAAGACGAGAAAGAAGAGATTAAGAAGAAGTTTGAGGAAGCCAAGTCTAGGGTTATCCAGTTGGAAGAAGATTTAATCGGTGTGACTGAAAAAGGGATTGAAAAAGAGACTGAATTAGACAGGGACAGAATGAAGAAATTGACACTGGAGAAGGAAAATCTGGAGTTGCagctgaaaaatgaaaaggatgAGAAAGAGCTGTATAAGATCCACTTGAAGAATACAGAACTAGAAAACACCAAGCTTACTGCCGAAATCAAGACACTAAAAGCAGCGGATGTAAACAAAGAGAATATGCTCACTCAGCTCAAGGAAGAAGTTGGCAATATGAAGATGTGCCTCTCAGAAAAGGAGAAGCTACAGAGAGAGATACTTACAAATACAGCCCCCAAGGGGGAGATTGCAACGCTGCGGGAACAACTCCGAAAAACAGAGGAGCAGCTGCAGGCCACCAGACAGGAGGCATCGATGCTGTCCGCAGAGCTGAGAGACGTGTCCAGCGCTCGGGACAAGACCATGTCCGACTTGTACAGAACCCGGCTGGAGGTCGACGCGCTTAAGATGAACCTATCGGACGCCGTGGCGGAGTGCAGCCAGAAGGAAGGACAGCTGCAAAAGATGAGGGCGGCTGTGGGGAAACAGGATGCCGGCGAAAAGCAGAACCAGGTTGAACAGGAATTGCACAGGGAGGTTGAAGACTTAAAGCTCAGGCTTCAGATGGCTGCTGATCACTACAGAGAGAAGTACAAGGAATGCCAAAAGCTGCAGAAGCAAGTCCTGAAACTCTCTGACCAAGGGGAGTCAAAGAAAGCCGCAGTGGCCTTTGGCGTCGAGCCGACAGAAGCATCCCACCATCTCGGAACAGCTGCGGCCGAGTGTTCCCCCCCAGGCAGTCCGGGTTCATCCGATATCGCGCTCGACCCGCTGATTCCAGGAAAACCCAAAGGCACGAATAAAGACCTGACGGAAAAGAGTGAGCGATACAAGAAATGCAAAGTGTTACTGGCTGAGGAGAAGGAAAGAAGCAGCATGTACGCTGATGAACTGGCCAAAATGGAGCTGAAGTTGAAAGAGCAGTTAAAAGTAAACGAAAGCCTGAGACTGCAGTTAGCAGCCGAGGAAGATCGTTACAAGAGTCAAGTAGCTGAAAAGGGACGAGAACTGAAGGAGTTGAAGGAAAATCTGGCTGTAGTTGtgaaagagaaggaggaagTAGAGGAGGAGCTGAAGAAGACTGAGTGGCAGACAGAAACATGTGCAGCGGAGAAATCCAAGACGTCCCAGCCCGCTGACGGCTCTCCGCCCGTGTACCTGCAGTACCCCATCCCGTACTCCCAGGAGCCCCCTGCCCCACTGGTGCCCATCTGCCCCCCCGACCTGCACTATGGAAACCCTTACTCCACTCAGCACATCAGAGATGGAGCAGATGGTGAATTTTCTTCCGACAAGATCCACAGACCTCCTGTAGGACCTCCCTCCTGGGACAGCAATGTGGTTTGCATTCAACCCGCGCGCAACCTGAGCAGGCCTGACGGACTCGAAGACCCCGAGGAGCTTAGCAATGGCGAAGATGCTCCAGAGAACTTGCACTCAGCCGCCCGTGAAACTCCCACTTCTCTGCTTCGTGACGGCCGGGCTCACTTCTGCTTTGATTCTAGcatcgATGTGCACAAGAGGTGTCCCCTGTGTGAAGTCATATTCCCCCCCAACTACGATCAGAGCAAGTTCGAGGAGCACGTCGAGAGCCACTGGAAGGTGTGCCCCATGTGCAACGAGCAGTTCCCCCTGGACTGCGACCAGCAGCTGTTCGAGAGACACGTGCTCATCCACTTCGACGGCAACCCGCTGAACTTTGAATAgatcgtcttttttttttttttttttttaagttcctAGGATGCGATGTAGCTATGAATTCCAGCAGCACCTTCTCTCTCTGACCATCGTCTGTGGCGCGCACAGGTGGTTGCACATCTTACTCAGTTTGTGTTGTCATTGCAGTGGAAATATACTCATACTTGCATGCTATATACGTAGTTGCCTATGTAGAGATTCAGGTTTATTTTCCGTAAAGGCAGGATATCTGAAAGTTAGTAGTGCAGTAGCGCCGACAGCGAAACGGAAATCCTGCCACGCCTTTATCTGTGCAAGATACCAGTGCCGTGTAACTTCATCCGTCACTGTTTTAACCCTGCTGATGGCAGAACCTTGTGCAGATCAGCTAGGATCTGCTGCCCAAGGGTTTAGTTCAGTAGAAGACGGAGTTCCTTGCTCAAACTGGCAGCGCCCCTCTCGTTGCCTGTCCATAAGGTAGACGCGTCTGTAACATTGCAGGAACTCGGGAAGGATACTGAGTCACCATTTACTTTTGGGCTACTGTTTAGTTTTGGCATTTGAGAGAAATGATTGTCGGCTTCTGTCTATAAAACCATTAATATGGATACTTAAGATTAATgattcacttttaaaatgactcTGCAGTACAGCGTGGATGCTGGCGGTAATTAAAGCATTATACGATTATACTATAGAGGAAGTGAATTTGTTTTAGAATTTGTTCTATACAATACTGAAATCGTAATATTAGCTGCTCGTTATCTTCCTGCTCATGGGTTACTCTGGGACACGGGCCCCGATATAGAACTATCTGCATCCTCTGGCATGTAGTTAACATGTTTTACAACACGCATGGAcgatttttaatttatatgtactGTTGATCTAATATTCTTGTtagttgcttttgttttcttgagtTACCCTATTAAAGTGCTTGTAATAACTTCATCACAAGGttgcttttcttctgttcactgaGAGTATTTGTGTCCAGCTGCTTCAGGGCACCGTTTCACGTTCACAGGGTTGAGTGCAGGATGTCATTACAGAGCAGAAGGAAAATCTCAAAGGAC

Function


GO: NA

KEGG:

id description
K21347 TAX1BP1; Tax1-binding protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00021645 True 3674 mRNA 0.48 18 23853919 23883152

Neighbor


gene id symbol gene type direction distance location
AMCG00021638 NA coding upstream 71092 23779770 ~ 23782827 (+)
AMCG00021631 NA coding upstream 340181 23506699 ~ 23513738 (+)
AMCG00021632 NA coding upstream 365711 23482955 ~ 23488208 (+)
AMCG00021633 NA coding upstream 373367 23470032 ~ 23480552 (+)
AMCG00021628 LOC103364058,LOC106950171,LOC107743218 coding upstream 484599 23343890 ~ 23369320 (+)
AMCG00021648 creb5,LOC107550799 coding downstream 72777 23955929 ~ 23974179 (+)
AMCG00021651 LOC106537063,LOC106517749 coding downstream 137713 24020865 ~ 24029573 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding downstream 245847 24128999 ~ 24135047 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding downstream 268912 24152064 ~ 24172881 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 337769 24220921 ~ 24232757 (+)
G87321 NA non-coding upstream 161771 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 175316 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 269583 23489081 ~ 23584336 (+)
G87233 NA non-coding upstream 656050 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 662166 23145004 ~ 23191753 (+)
G87402 NA non-coding downstream 146692 24029844 ~ 24032117 (+)
G87423 LOC103376870 non-coding downstream 197584 24080736 ~ 24139508 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 333222 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 377810 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 476352 24359504 ~ 24360909 (+)
AMCG00021602 NA other upstream 1142775 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1562778 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2596730 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2617839 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2621066 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 291251 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 300056 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 1026732 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1393624 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1869205 25752357 ~ 25753253 (+)

Expression



Co-expression Network