AMCG00021646 (hibadh,LOC101062690,LOC106570522,LOC108441516)


Basic Information

Item Value
gene id AMCG00021646
gene name hibadh,LOC101062690,LOC106570522,LOC108441516
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23844671 ~ 23848491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021646
ATGGCCTCTAAAACTCCAGTAGGTTTCATTGGTCTGGGTAACATGGGGAATCCCATGGCAAAAAACCTCCTGAAACACGGCTATCCAGTCATTGCTTCTGACGTTTTCCCAGAGTCATGCAAAGAAATCCAGGATTTAGGAGCACAGatCCTGGATTCTCCTGCTGAAGTCGCTGACAAAGCAGACAGAATCATCACAATGTTGCCCTCCAGCCCCAATGTAATAGATGCATACACAGGGCTAAATGGGATTCTGAAGAAAGTGAAGAAGGGGTCACTGCTAATAGACTCCAGCACTATCGATCCTTCAGTTTCTAAGGAAATGGCCATAGCAGCTGAAAAAATGGGAGCAGTGTTTATGGATGCCCCAGTGTCTGGAGGTAAGGAGCAGTGA

Function

symbol description
hibadh Enables 3-hydroxyisobutyrate dehydrogenase activity. Involved in valine catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion.

NR:

description
PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0006573 valine metabolic process biological_process
GO:0008442 3-hydroxyisobutyrate dehydrogenase activity molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021646 True 393 mRNA 0.47 3 23844671 23848491

Neighbor

gene id symbol gene type direction distance location
AMCG00021647 hibadh,LOC107744697,LOC107596727,LOC107550829,LOC107685537,LOC107743154 coding downstream 19895 23813972 ~ 23824776 (-)
AMCG00021644 hoxa13b,LOC105018810 coding downstream 86650 23756876 ~ 23758021 (-)
AMCG00021643 NA coding downstream 102117 23732442 ~ 23742554 (-)
AMCG00021642 NA coding downstream 117527 23724461 ~ 23727144 (-)
AMCG00021640 NA coding downstream 124571 23711509 ~ 23720100 (-)
AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding upstream 36801 23885292 ~ 23892646 (-)
AMCG00021650 NA coding upstream 85993 23934484 ~ 23942615 (-)
AMCG00021653 NA coding upstream 204099 24052590 ~ 24054872 (-)
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding upstream 208312 24056803 ~ 24073972 (-)
AMCG00021660 fkbp14,LOC106943903 coding upstream 367377 24215868 ~ 24220678 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 356459 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 362771 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 472479 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 646828 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 738483 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 228408 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 232245 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 430146 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 697591 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1138951 24987442 ~ 24989739 (-)
AMCG00021634 NA other downstream 345910 23495025 ~ 23498761 (-)
G87263 NA other downstream 506187 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 511703 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 683680 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2173356 21666402 ~ 21671315 (-)
AMCG00021662 NA other upstream 351045 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 494409 24342900 ~ 24363459 (-)
G87674 NA other upstream 1555159 25403650 ~ 25406538 (-)
G87806 NA other upstream 2056953 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2242736 26091227 ~ 26105391 (-)

Expression


Co-expression Network