AMCG00021651 (LOC106537063,LOC106517749)


Basic Information

Item Value
gene id AMCG00021651
gene name LOC106537063,LOC106517749
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24020865 ~ 24029573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021651
ATGCTGCAAGAAAACATCAATCTCAACGGCAGGAGGCTGAAGGCAACGCTGTCGCACCACCCGGCGGCCATGCCCAACGGGAACATGAACACCATGGGCCACATGATGGAGATGATGTCAGCGCGGCAGGACCAGGGGCCCCACCACCacctgcacccccacccccacgccCACCAGCCCATGCAGCCTCCGCCTCACGCCTACCAGCACCAGCATGCCCAGCACCACCACCACGGGCACCCACCACCGCCCCACCACCACCCACAGAGccaccagcaccaccacccccaccagcCGCACATGCACAGCCACCCGGGCCACCACCAGACATCCCCCCACCAGGGCATGCACCCCGGGGCCCAGTCTCAGGTGTCGCCCGCGGCCCAGCAGATGCAGCCGACCCAGACACTACAGCAGCCCCAGCCCACCGGAGGCCGGAGGAGGAGAGTGGTGGACGAAGACCCGGATGAGAGGCGGCGGAAATTTCTAGAAAGGAACCGAGCCGCCGCCACGCGTTGCAGACAGAAGAGGAAAGTGTGGGTGATGTCATTGGAAAAGAAAGCAGAGGAGCTAACTCAGACAAACATGCAGCTTCAGaatgaGGTCACGATGCTGAAAAACGAAGTAACACAGCTCAAGCAACTGCTTCTCACGCATAAGGACTGTCCAATCACTGCCATGCAGAAGGAGTCACAAGGTTACCTAAGTCCGGAGAACAGTCCCCCGGGAAGTCCCACCGCAGTCTGTACCCAGCAGCAGGTCATTCAGCACAACACCATCACCACATCCACCACTGCCGGAGACGCTGTGGGCAACTCTGCGTTAAACCAGCTAGCCAACCACAGAACAGATATGAACCCTATCCTTTAA

Function

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021651 True 870 mRNA 0.60 5 24020865 24029573

Neighbor

gene id symbol gene type direction distance location
AMCG00021648 creb5,LOC107550799 coding upstream 46686 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 137713 23853919 ~ 23883152 (+)
AMCG00021638 NA coding upstream 238038 23779770 ~ 23782827 (+)
AMCG00021631 NA coding upstream 507127 23506699 ~ 23513738 (+)
AMCG00021632 NA coding upstream 532657 23482955 ~ 23488208 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding downstream 99426 24128999 ~ 24135047 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding downstream 122491 24152064 ~ 24172881 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 191348 24220921 ~ 24232757 (+)
AMCG00021659 NA coding downstream 244522 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 313279 24342852 ~ 24353253 (+)
G87321 NA non-coding upstream 328717 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 342262 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 436529 23489081 ~ 23584336 (+)
G87233 NA non-coding upstream 822996 23197621 ~ 23197869 (+)
G87215 NA non-coding upstream 829112 23145004 ~ 23191753 (+)
G87402 NA non-coding downstream 271 24029844 ~ 24032117 (+)
G87423 LOC103376870 non-coding downstream 51163 24080736 ~ 24139508 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 186801 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 231389 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 329931 24359504 ~ 24360909 (+)
AMCG00021602 NA other upstream 1309721 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1729724 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2763676 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2784785 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2788012 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 144830 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 153635 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 880311 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1247203 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1722784 25752357 ~ 25753253 (+)

Expression


Co-expression Network