AMCG00021652 (LOC107743225,LOC107550833,LOC107743199)


Basic Information

Item Value
gene id AMCG00021652
gene name LOC107743225,LOC107550833,LOC107743199
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24056803 ~ 24073972 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021652
GATGAAGGGTACCATCGTCTGCCTCGTGTTCCTTTGGGCTGCTATTGAGCCGAGCTGTTCGAGCATTTTTTCCCCAAGGAATGTCAGAGTCCGAGCAAGTCGATCAACAGGATCAGACCCTGGAAAACCCCTGTTTCTCACCCCTTATCTGGAATCAGGAAAGATTGAAGAAGCCAGGAAGCTGAGTTTAGTGGACCCTCTCCCTGGTGGCAATGTGAAGAGCTACTCTGGGTACCTCACAGTCAATAAGACCTGCAACAGCAACCTCTTCTTTTGGTTTTTTCCTGCTCAGGTAAGGCCCGAGGCGGCACCAGTGTTGTTATGGCTTCAGGGTGGTCCAGGAGGAACTTCAATGTTTGGACTCTTTGTTGAACACGGGCCTTATGTTGTATTTCAGAATTCAACAGTGGGCCAGAGGAAGTTTGCATGGACTGACAAGTATTCCGTCCTCTACATTGATAACCcaGTTGGTACTGGGTTCAGCTTTACTGATGATGAGAGAGGCTTTGCTCGCAACCAGGATGATGTGGGAAGAGATCTATACAGCGCTCTTACACAGTTCTTTCAGATCTACTCGGAGTATCAGCAAAATGAATTCTACGCCACCGGAGAGTCATACGCTGGGAAATATGTTCCTGCCATCGGCTACTACATCCACATGAATAATCCTTCGGCGAAAGTCAAAATCAACTTTAAGGGAGTTGCAATTGGAGATGGCCTTTGTGATCCCGAAGtgATGCTAGGTGGCTATGCTGAGTTTATGTACCAGACCGGCCTTGTAGACGAGATGCAGAAACAGTTTGTCCAACAGCAGACTGATCTGGGAGTGTCGTACATCCAGCAGAAGAAATGGGTGGAAGCTTTTGAAGTTTTCGATACCTTGCTTAATGGAGATCTCGTCCCCTACCCttctttctttgaaaatgtcacAGGATGTAAGAACTATTTCAACTACCTCCAATGCCAGGAGCCTGAGGATCAGGACTATTTCGGCAAGTTTCTGTCTTTGCCAGAAGTGAGGAAAGCTATTCACGTGGGCAACCTGATCTTCCACGACGGGTCTGAGGTGGAAAAGCACTTACTGGCAGATGTGATGAAGACCATCAAGCCATGGTTAGCAGTACTGATGGAAAAGTACCGGGTACTGATGTACAGCGGACAGCTTGACGTTATTGTGGCCGCTCCACTCACCGAGCGCTTCCTTCCTACGGTTCCGTGGTCCAAATCGGAGGAGTACAAAAAGGCCCAACGGTTTTACTGGAAGGTCTCTCCTGATGACACGGAAGTGGCCGGGTTTGTCCGCCAGGTCGGGGAGTTCTATCAGgttaTTGTCCGTGGGGGAGGACACATTTTACCTTATGATCAACCAGAAAGATCCTTTGATATGATCGACAGGTTCCTTTCAAGAAAAGGGTGGTAACAAGGGTGACTTTTCCCCAAGTTgcacatttcattacaattacaaagatTTTGAATGAgagtgttacatttttttgcTGGTTGTACAATTTGAATTTACTGATTTTACAAGACTTGAGTATTGGTGCACCTTATGACAATGGGATTTGCTTAATAAGATGTGTTTTGTAACTCTTATGAAAATTAATATGTTCAGgacactgcaaataaaaaatattatttttgtatttttaaaccatcCCAAAACTGTTGTGAACGGGGATTCTGCTTTTAAAGGTCAGAAATGCACAGTAACAAGACTGTAAGGTTTATGTCCCAATAAGGTATTAAGGGttaaatgaggaaaaaatatGGGTAGaccagtaaaagtaaaacaaataaactaaatctaTCAAAACCCCATGATTTGTAACACTCCAAAACGTAATTGTTtaaaagatttttgttttattttttttaataatctgaaGTTCATTAAATCACACTGCATATGAATTAATCCAAGCACGCTAACACTTTGGATGACAAAATCGGAAGATACTATACCATGATGTAAGGTGAAATAGTCTGTATTTTTCCtcagttttgtgttatttttctgaCTCCTTAACCTTGATCATTGGAACAAATGctactaataaaatattaaagacattttgaaaatgataaa

Function

NR:

description
PREDICTED: probable serine carboxypeptidase CPVL

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K09645 CPVL; vitellogenic carboxypeptidase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021652 True 2089 mRNA 0.42 12 24056803 24073972

Neighbor

gene id symbol gene type direction distance location
AMCG00021653 NA coding downstream 1931 24052590 ~ 24054872 (-)
AMCG00021650 NA coding downstream 114188 23934484 ~ 23942615 (-)
AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding downstream 164157 23885292 ~ 23892646 (-)
AMCG00021646 hibadh,LOC101062690,LOC106570522,LOC108441516 coding downstream 208312 23844671 ~ 23848491 (-)
AMCG00021647 hibadh,LOC107744697,LOC107596727,LOC107550829,LOC107685537,LOC107743154 coding downstream 232027 23813972 ~ 23824776 (-)
AMCG00021660 fkbp14,LOC106943903 coding upstream 141896 24215868 ~ 24220678 (-)
AMCG00021661 NA coding upstream 163303 24237275 ~ 24256623 (-)
AMCG00021663 NA coding upstream 187929 24261901 ~ 24277596 (-)
AMCG00021666 ankrd28 coding upstream 205620 24279592 ~ 24307071 (-)
AMCG00021667 NA coding upstream 292753 24366725 ~ 24369123 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 568591 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 574903 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 684611 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 858960 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 950615 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 2927 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 6764 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 204665 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 472110 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 913470 24987442 ~ 24989739 (-)
AMCG00021634 NA other downstream 558042 23495025 ~ 23498761 (-)
G87263 NA other downstream 718319 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 723835 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 895812 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2385488 21666402 ~ 21671315 (-)
AMCG00021662 NA other upstream 125564 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 268928 24342900 ~ 24363459 (-)
G87674 NA other upstream 1329678 25403650 ~ 25406538 (-)
G87806 NA other upstream 1831472 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2017255 26091227 ~ 26105391 (-)

Expression


Co-expression Network