AMCG00021654 (chn2,LOC107684543,LOC107550834,LOC107745376)


Basic Information

Item Value
gene id AMCG00021654
gene name chn2,LOC107684543,LOC107550834,LOC107745376
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24152064 ~ 24172881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021654
ATGCCAGAGGTCTCCGCAGAATGGAGCACAGCTGCCGCGACTTTGCTGGCTGCTTTTAGAAGACGCTTGACAAACCTAAGGGCTCCCAGCCTCAGCGGCTCGGGGGAAGAAATGGAAAGGCTCTGGGACCCAAACGACATGCCCTCTGAGGAGCTGTGGTTGGACACTGAGCAGAACTGCAGCCTGGTGCCGCAGAAGTCCAAACGGGACAGGAAGCGGCAGGAGCTGCTGGCCATGGCTCTGGGGGTGAAAGTCAGCGGCCGCGGGACCATGTTGTGGCAACCTCTAAAACTCTTTGCCTATTCACAGATAACGTCGCTGGTCAGGAGGGCCGCCCTGAAGGAGAACGAGAACCATTTCAACTACGAGAAGGCTCACAACTTCAAGGTCCACACGTTCAGAGGGCCTCACTGGTGTGAATACTGTGCCAACTTCATGTGGGGACTAATTGCTCAGGGAGTCAGATGCTCAGattgTGGATTAAATGTGCATAAGCAATGTTCCAAGTACGTCCCCAACGACTGCCAGCCAGACCTCAAGAGGATAAAGAAGGTTTACTGCTGTGACCTGACCACACTGGTCAAGGCACACAACACCCAGAGACCCATGGTGGTGGACATGTGCATTCGGGAGATAGAAGACCGAGGTTTACAATCTGAAGGACTCTACAGAGTGTCTGGATTCACTGAACACATTGAAGATGTGAAAATGTCCTTTGATCGAGATGGCGATAAAGCGGACATCTGTGCTAACACGTACGCAGACATCAACATAATCGCAGGAGCACTTAAGCTTTACTTTCGAGACCTACCCATCCCCGTGATTACCTATGATGTGTATTCCAAGTTTATTGAAGCAGCAAAATTAACGAACCCCGATGCCAGACTGGAAGCGATTCACGACGGCCTGCTGTTGTTGCCCCCCGCGCATTACGAAACGCTGCGGTACCTGATGACTCATCTGAAGAAgGTAACCATGTTTGAAAAGGACAATTTTATGAATGCTGAAAACCTGGGAATAGTGTTTGGACCAACACTAATGCGGCCCCCCGATCAGAACACGCTTGCCACTTTAAATGATATGAGATATCAGAAATTAATCATTCAGCTTTTGATTGAAAatgaagatgttttgttttaaacaaatgaagGGCATCTTTCCATTTGGCATCCCCACTGAAATGGACTAAATAACCAATAGCAAACTGCAAGTAACCCAGGATTGTTATTCTGCAATTGTGCAGATGATTGCCAATGTTATTTCTCTGTCTTATAGACATATCTCTATTGAGGTAAGGGTCAGATCTGGTCTCCTGCCCTGTATCTTTAGATGGCACTGTGGTCTGAATTACACTTTATCAGATCCCTGGTTCCtggtttctttattataatattacacCACACTTTCATCACAGAACATAGAcatatttggggggggggggtaaaagTAGACTTGGCATTAACTCATAATACTGATATCAATCAAAGTAACAATACAAATGATCTTAAGGTAAGACTAGTTCTCCTTTTCCTCGACACACTTTATGCATAGGACATACAGTATATAGGATAAGCTGATCCATATATAAGACTTTATATATGGtctttgattattgtttttatatcagCATAAATCACTTTAGTTCATTTTGTTGTGTGCATGGATCTGTGTGTTGTTAATCTACTTGGTTTCATCTGTGATTCTCAATACTAAAGCATTAGATGTAAAATCATcttaagtaaaattaaatgaaagagaTAAAGAGACTTTCAAAATCCTAACATTAGGGTTAGTCCATCAGACTAATATGCGTTACTTAGTTACACACTGTTTAATATAAACTTTTAATCATGCTATTCATCATGCTAATCATAATACTTTGTTACGTGTGTCATTTGAAAAAAGTTGTCAAAACTGCCTTTaggcaaagtacattttttaaagctactgagtttgtttcctttgtaatgagtgatttcttttttaaacatctttgtTTACTTCAGCTTAACTCtgctgtaaaatgtaacaaatgagATTTATGTTTCTAACGtgggcttaaaaacaaaatatataataataattaaatgggGTGCATAGTTTCAGATATTTTGATCCAAGTGACAGGTCTTAAAGATCACACATACgcattatttgaaatgtaataacacattattaaaataaaatcttaacaACAGTTGTACTTATTCTTAAGCGAATAAGAAAGAATACAGATATGTCACAGAGCCTGTTTCAACAGTGGCTTGTGTAAAGCACTGGGTGAATGAAAAGGCATTGTGCAGTTGTGCTGCAGCTGGAAACTGATTATAGCCAATAGCTTTTACATTATTacgtttcagtttcagtttggGGGGGTTGAAAGGCTGGTATAGTGACACTTTTTAACCCAGCCAGCAGTGTTCTATACATAAGCAATCTTCCAGCAGTGTGTGTACAAGCACTAAAACATGTCTGTAGCACTTctccaacacacaacaatattgTTTCTGATTTTGAAATTCCTATACTTTTTATTCTTCAATGTTAGACACAGTGAACTGTCATGTTTTACACCATTTTAGGGTGCTTATTTGGAAGATCAATTAAAGGTTATCTGTAATTCACACCGTGATAAATATGCTTTACATACAATAGATGAATAGGGATCCATTCATTCATCAACCATATTCATTTTAGAAGCATTTTCACATTGATATGGATTGTGTTCTCCTTGGAAAGATGGGTAATAAGACTGTGAATGAGAAACAACACATCTGTCTCCATGACACCCAAACCTAAAGATACAAGGACAGCGGACAGTCCTGACCCTGTGAGAAAATTAgcactttttcttttgcttaAGAGTGTATTTAATCTGCCTGTAAAACTAAGTGTATTGTTAACGTCTTGTTcctgtatttatatacagtacgtactttgaaaaaagaaatactTTCATTCTGTAAATAGAGCCgtcttttaattgtaaatgcaattgttttggttgaattattattgtggaagaaaatggaaaaaaggatTACCCAAAAAAGAATTTTTTCTTGTGTGAGTCTCATTTTAGTTGATCTACAGTGCTTATGAGTAAGGTACTTCATagtcaaataatacaatatagctTTCACTAGGTTTGTTAACTAATCAATGTGATTTCATATTTCAGTTAAAGGATTTGATCTAAacaaaatctaaagaaaaaataaattgagctTAACTGcaataatttgatgtttaaagtaaaattattaGGAACGTCCGTTTTCTATATTTAAGTTCATTGTGAATATCTGTTATAAGTAGGTGCCTTTTGCTAACTGTACTGTATCATAAGAATATTACTGAGACCAGCAAGAACATTGCTTtgataaaacaatacatgtaaatgtctttttttccccacttgtCATTATTatcagatttgattttgtttgggtttttgttttttgtacaaatAACAAAGGTACTTCCTTTATACAAAATTAAGATGCGGAGATTATTTTTTGtgaacatattttcaatttagattgaaatttataaaaatgtaagaagatacatttattaaaggtgttttaaagcattatatGATGCATTAACTCACAACTATCACAAATGATtccgtttttttgtttctgtaactgTGTGTCTGGGAATGGAAAAGTCAGCAAAATCTACATCCAGGTGGGGAATCCATTGTCTACAAAAATTGTTATGAATAAAGCTTATCTTTTTCCACTGTGTGGATAAACATGGTAACGGGGAAGTCCAAAGTTAGAGTCTGATATATGTTTATGGTGCAAGacattgaaaatgcaaaattttAATGCTTGTGGAAAATTCTAGTATCTTCCCATTTTATGCATATCCAAGAACATCCATGTTATGACACCTGGctgaaatattattaaacacattttgatattttgtcaACTTTAACTTGTCCAAATTTCTCTTTGCACAATTGGAAGTCATGTTCATTAAAGTTGCATTGCGAACTACAATGTGTTCCAGTTCCAGTATTTCCAAATCAAACTTTGTTcgaaaaatgaattgaaaactTGCACAGAATCTGAGTTTCACTGCAAGAGGTACTGGCACAGAGCCACACTTGCAGTGTCTATTATCTACTATCTAGTATCTAGGTTGTATAGTAATGtaagttattattaatacaatgatGAAGTatgaatataatgttttaaaattgaacagACGCTGCAGAAGTTTGTGATGTTTTGTGACCTTCAGCATTCCAATTCCTGCATATTTCTGTGAAGTACCCACTTATAATGAAGTATTATTGTGTGAATGTAACACAATGTACATGAAAGGGGCTTGTGATTTTAGATTTCACAATAGAGCATTTTTGGAAACAAGACCTTGGAAGTTTTTCCTATTAGTAgctgttttttaactttaatatcATTCAGACATTGCATTTGATAAATCATTCTTTCAACTGTTGCAGTGTAATCTTATTTCTGACTTTAAAGAGGAAGGTAACCTTGCAAATATTTACCTAATGCTGTTGGCATGAATACAATTGTTAGTAGCAATCACTGTCTGTTAATTTATAACTAGCAAATATGAATAGCCGTATGAAAGGAAACCTGCTTGCATTCCCTGTTAAAAAGAGTG

Function

symbol description
chn2 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

NR:

description
beta-chimaerin

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001565 phorbol ester receptor activity molecular_function

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021654 True 4653 mRNA 0.37 7 24152064 24172881

Neighbor

gene id symbol gene type direction distance location
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding upstream 17017 24128999 ~ 24135047 (+)
AMCG00021651 LOC106537063,LOC106517749 coding upstream 122491 24020865 ~ 24029573 (+)
AMCG00021648 creb5,LOC107550799 coding upstream 177885 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 268912 23853919 ~ 23883152 (+)
AMCG00021638 NA coding upstream 369237 23779770 ~ 23782827 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 48040 24220921 ~ 24232757 (+)
AMCG00021659 NA coding downstream 101214 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 169971 24342852 ~ 24353253 (+)
AMCG00021664 NA coding downstream 198986 24371867 ~ 24377488 (+)
AMCG00021671 NA coding downstream 271426 24444307 ~ 24457362 (+)
G87423 LOC103376870 non-coding upstream 12556 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 119947 24029844 ~ 24032117 (+)
G87321 NA non-coding upstream 459916 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 473461 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 567728 23489081 ~ 23584336 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 43493 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 88081 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 186623 24359504 ~ 24360909 (+)
G87704 NA non-coding downstream 1356443 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1659573 25832454 ~ 25832988 (+)
AMCG00021602 NA other upstream 1440920 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1860923 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2894875 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2915984 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2919211 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 1522 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 10327 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 737003 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1103895 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1579476 25752357 ~ 25753253 (+)

Expression


Co-expression Network