AMCG00021655 (chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649)


Basic Information

Item Value
gene id AMCG00021655
gene name chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24128999 ~ 24135047 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021655
TACCAGTTACAGCAGGAGGCCCCGCGCCCCAAGAGGATTATTTGTCCCAGAGAGgttgAAAACCGGCCAAAATACTATGGGAGAGAGTTCCACGGTATGATTTCCCGGGAGCAGGCCGACGATCTCCTGTCCGGGGTCGAGGGGGCCTACCTGATCCGGGAGAGCCAGAGGCAGCCTGGCTCCTACACCCTGGCCTTAAGGTTTGGCATCCAGACCTTAAACTACCGGCTGTTCTACGATGGGAAGCACTTTGTGGGGGAGAAGAGGTTCGAGTCGATGCACGACCTAGTGACGGACGGACTGATCACACTGTACATCGAGACGAAAGCCGCCGAGTACATTTCGAAAATGACGACAAACCCCATCTATGAGCACGTGGGCTATGCGACGCTCCTCCGGGACAAAGTGTCGCGAAGACTGAGCAAAAGCAAGCAGGACTCTAAGAAGGTCACGGCCCCCCGGGAGGACTCCAACTCGGTGGAG

Function

symbol description
chn2 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

NR:

description
beta-chimaerin

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021655 True 483 mRNA 0.57 4 24128999 24135047

Neighbor

gene id symbol gene type direction distance location
AMCG00021651 LOC106537063,LOC106517749 coding upstream 99426 24020865 ~ 24029573 (+)
AMCG00021648 creb5,LOC107550799 coding upstream 154820 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 245847 23853919 ~ 23883152 (+)
AMCG00021638 NA coding upstream 346172 23779770 ~ 23782827 (+)
AMCG00021631 NA coding upstream 615261 23506699 ~ 23513738 (+)
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding downstream 17017 24152064 ~ 24172881 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 85874 24220921 ~ 24232757 (+)
AMCG00021659 NA coding downstream 139048 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 207805 24342852 ~ 24353253 (+)
AMCG00021664 NA coding downstream 236820 24371867 ~ 24377488 (+)
G87402 NA non-coding upstream 96882 24029844 ~ 24032117 (+)
G87321 NA non-coding upstream 436851 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 450396 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 544663 23489081 ~ 23584336 (+)
G87233 NA non-coding upstream 931130 23197621 ~ 23197869 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 81327 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 125915 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 224457 24359504 ~ 24360909 (+)
G87704 NA non-coding downstream 1394277 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1697407 25832454 ~ 25832988 (+)
AMCG00021602 NA other upstream 1417855 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1837858 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2871810 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2892919 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2896146 21229852 ~ 21232853 (+)
AMCG00021656 NA other downstream 39356 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 48161 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 774837 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1141729 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1617310 25752357 ~ 25753253 (+)

Expression


Co-expression Network