AMCG00021658 (LOC106574036,LOC103150415)


Basic Information

Item Value
gene id AMCG00021658
gene name LOC106574036,LOC103150415
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24220921 ~ 24232757 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021658
GCAGAGTGCCCACGTAGTGCGCAGGCTAGTGTGGGGACGGTTACGGAAATCGCATTGGTGAATTAAAAGACATTGACCTTGCTAATATAATGCCCTGTAACGagtagagaaaataaatcatggaaggAGTACTGTATAAGTGGACGAATTATCTGAGCGGTTGGCAGCCTCGCTGGTTTGTGCTGGAAGGGGGAACTTTATCTTATTATGACTCTCAAGAAGATGCCTGGAAAGGATGTAAAGGCAGCATTAAAATCTCTGTTTGTGAAATACAAGttcaCTCCTCAGATATTACACGTATGGACCTGATCATCCCCGGGGAGCAGTATTTCTACCTGAAGTCCATTAATGCTGCAGAGAGGCAGAAATGGCTTGTTGCTCTGGGTTCTGCCAAGGCCTGTCTGACAGACAACaggacaaagaaagaaaaaggcaagTGCGTGTGTCAAACAGGAGCCTTCGCAAACTGGGTCACTGACAGAAACTCTTGTGAAAATGGAAAGTCAAAACTCCATGAAAATACAGAGGCCCTTAAAACAAAGATGTCTGAACTGCGACTGTACTGTGACCTCCTCCTGCAGCAGgtgaataaaattaaagagaGCCCTGAACACGCGGAGTCCAGCACCACGGTCGAGGAGCCAGACAATATTGACATGGGCACCCTTGTGAAGTCCACCTGTACCACCTTCCTGAAGACGCTGGAGGAGTGCATGCAGATCGCCAGCAAAACTTTCAGCTCCGAGCTGTTGCACCAGACGCCCCCTGGCTCCCCACCTGTAGCTGCCATTAAACCACACAAGGCCAGTGTCAAGCCTAAAATTAAACCCTTCAATGCATCCAGTCACAGCATCCTGGAAAAaaaaaaagaattaaataaCAACTGCCGGAGTGAGGCTACCATGGAAACGCCGATAACCGACGGACAAGAAAAAACGACTCTTGTCGAGAGTCCGGAACGCCACGCATCGCCTGTCTCCAGCGACTCGCAGAACCAGCTTGAAGGTGGCAGCCCGGCCGAGGGGGAGCACACGGACACGGAGGAGTTCGCAGACGCCCCCAGTGAGGGCCGTGCTGAGAGTCCTGGTGGGCAGGGAGCAGGAGAGGGTCAAGGGGCTGGAGGGGGTTCGGGGCCAGAGCAGGGCGACGTCTGGGAGCAGCAGGAAGATGACCTCGAACAGAAGGACATACCGGATGGGCCGGAGGAAGTTGACACATTCTTTAGTACTATGGGCCACAGaTTTAGTGATTTAAAACTGGAAGAGGACAATGGTATCCCAACAGAGCCCTTTTTGGAGTCTTGCTATGCAATAGTCCCTGTATTAGATAAGCTGGGACCCACTGTTTTTGCTCCTgttaaaatagattttgtagGTAATATTAAgaaaatcaatcaaaaatacATAACGAATCCAGAGAGGTTCAACACCCTGCAGAAGATCGTGCTCTATGAAGTGGATACCGGTGTCGCACAGGTTCGAAATTCGGCAACCGAAGCTCTTTTGTGGCTAAAAAGAGGCCTGAAATTCCTGAAAGAGTTCTTATTAGAAGTGAATCGGGGGGAGAAAGACATCCACGCTGCTCTCAataACGCTTACGGGAAAACCCTGCGACAGTACCATGGCTGGGTTGTGCGAGGAGTGTTTGCTTTGGCACTGCGGGCAGCTCCATCCTACCAGGGCTTTGCTGCAGCGCTGGTCTCCAGGGAAGGAGATGAGCAGAAGGAGGGCTTTGCCAAGGGGATGCGCCGGGACCTGGACGTCTACTTGCCGGCCATGGAGCACCAGCTGAAACTCCTGGATGCCCTGTATGAAGACTACAATCTGGAGTCGGATGAGATCGTATGATGATGGCCAACACACAGCGAGACAGACTTTCCAACATACCGGCACAGTCAGGgggtgtctctgtctgtgtgtgtacgtgtgtttttataattctgtatttattatcgCTGCGGACTGAGTTTCCAGTCGGCTCGCCTGTGAATGTTCTGTCCGCCCAACACGCGAAGCAATAGAACATGTGGCCAGATGTTCATCTCCTCCACAAGTATTACAGGACCTCAAGGAAATCCAAGTGCAGTAGTTTTATACTCTTTAAGAATGACAATGTGTGCTGTTTCCCATTAATTCTTCTTATTCtgcttattattgttgttatatgAAGTCTGATTATTGGACCAAACTATAACGTAAGCCCTCTGCATGGAAAAGTTTCAGAAAGCTCTTATGGGGTTAGATGtagttttcagatttgttttatgttttttaagttgTGCTTCCATCACTACATATTATAGTACAATGTTGGACTCGGGTGCATTTATACAATGCTTGGACAGCCATACACAAGAAAAGTGAATTGTAATGCAGACATTCTGTACTGTGAAAAACGgacattatttattacaatcGTTTACATTATGTGggaaaacttgttttgttttttcatttgaaaattgtAGATTCTGAAGGTGATCTACATATAAATAACGCAGAAGTGACATACCATAGGaaatatgtttagttttattgaCTTGGTGATGAAAAGCAATTTATATGGAGAACTACAGGTCTGCCATTCAAG

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family A member 8-like

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K08051 PLEKHA8, FAPP2; pleckstrin homology domain containing family A member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021658 True 2589 mRNA 0.47 14 24220921 24232757

Neighbor

gene id symbol gene type direction distance location
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding upstream 48040 24152064 ~ 24172881 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding upstream 85874 24128999 ~ 24135047 (+)
AMCG00021651 LOC106537063,LOC106517749 coding upstream 191348 24020865 ~ 24029573 (+)
AMCG00021648 creb5,LOC107550799 coding upstream 246742 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 337769 23853919 ~ 23883152 (+)
AMCG00021659 NA coding downstream 41338 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 110095 24342852 ~ 24353253 (+)
AMCG00021664 NA coding downstream 139110 24371867 ~ 24377488 (+)
AMCG00021671 NA coding downstream 211550 24444307 ~ 24457362 (+)
AMCG00021672 plcl2,LOC106605271,LOC106582018,LOC107688208 coding downstream 281361 24514118 ~ 24522275 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 2097 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 81413 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 188804 24029844 ~ 24032117 (+)
G87321 NA non-coding upstream 528773 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 542318 23673892 ~ 23678603 (+)
G87482 NA non-coding downstream 28205 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 126747 24359504 ~ 24360909 (+)
G87704 NA non-coding downstream 1296567 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1599697 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 1652689 25885446 ~ 25885703 (+)
AMCG00021657 NA other upstream 22094 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 42829 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 1509777 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1929780 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2963732 21241666 ~ 21257189 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 677127 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1044019 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1519600 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 1610937 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 1919311 26152068 ~ 26197076 (+)

Expression


Co-expression Network