AMCG00021661


Basic Information

Item Value
gene id AMCG00021661
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24237275 ~ 24256623 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021661
TGGCATTCCTTTTTCCTAAAGGCAGAGAGATATtgggagagagcgagggagtgagagagcgagagagccagagacagagagagagagaggagagagcaagggagaggagagagagaagagagagccGACGCCAGAGCCACGAGTTTGAACTAGCGAGTCTCTCCAAGCAGCATGGTCCTGATCACAATTGGATTTCATTTCCAGCTCTTCTTCTGCTATGTATTATCTCAGTCTTCCTTCATGGACAATATTCTGTCATTTCCAGCAGCAATCAAATCTCTGGATCAGAAGAAAAAGTTCAATATATGCTGTCTCTTAACTCCGCCCCCTCCACCTCtattccctccccctcccctgctTAGAGAACGCAGGAGTCATAATGATCAAACAAATAACAGCGATGTTGGagatggaggagaagaagaaggagagaacCCCATAGGGCCCGGGTGTGTGCCAGGGCCCACTGGCCCTCCTGGACCACAGGGAGAAATCGGCAGACCTGGAGCGAAGGTGAGAGAAACCATTACTCATGTTCTGGATAGGTCACAGTTCGCCTGTCCTGAAGGTCTCCTGTTTGTCACTGCAGGGTCGGCCGGGTCCACCAGGTCTCCCAGGGCAACAGGGGCCAGCTGGTTGGCCAGGACCAAATGGGCCCAAAGGGAATATGGGTCTCCCTGGAATGCTGGGACAGAAGGGAGAGATGGGTCCCAAGGGCGAGCCTGGGGTGGCAGGGCATCGAGGACCTACTGGCCGGCCGGGCAAAAGGGGCAAACAGGGAGCGAAGGGGAGCAGTGGGACCCCTGGAGCAATAGGTCCTGCAGGGCCACCTGGTCCGACTGGCCATCCAGGACCCCCCGGCCTCCCTGGGTCAGGCAAGGGAATTTCAGGGTTGGACCAAAGGGGGATAAAGGAGTACCTGGAAACCCAGGACGGTGCTACTGCAACCCCCCCGTGACTGTGAATAACCCCCCCTATGAGGAGCCCGCCCTGGGAGTCGGCTACCCCAGAGTGCCAGTGATATTCGTGGTCAACAATGAAGAAGAACTTGATAGGCTTAACACTGACAATGCACTGGCCTTCCGAAAAGATCAACGGTCACTTTATTTCAAGGACAATGAAGGATGGCTTCCGATTCAGCTCACACCCTTCCAGTCCACTGAGAAAGTGCCCGAGTCTGATGGCTACTGTGGAGATGGGATTGTCCAAGCCTACAATGGGGAGGACTGCGATGACGGCAACAAAATTGTAACCGATGGCTGCATTAGTAaGTCTTACGGACAGCTCAAGTGCACAACGTACTGTTACATCGACTCCACAAActgcaaatatttcacatgAAGGACAAACTGAAGAGTGGGCCGTGTCCCACAGTGTCTTGTATGTCAGGTGCTATATAACCCAACCGACAGGACTGAGGcaacacaaagagaaaaaaagaaagagacaacaattttttttttaaatatatcaatccTTCTGTTCTATTGCTGCTGAAAAGGCATGTAGCTATTGGGGATTTCCGTAAACCCAAATGTACGTCCCGAAACACATAGGACCATTGCATTCTGTCTTAATAATTCAACCAAGGATTAATTACGGTTTGCTAGGTAGACTTCTAACGCTTAGCTGGGAGTGCCTGAGGAttctccctccttccccacGGGAGAGAGAGCGATGGAGCCACAGGTGAAGACATTAGAGATCGGTGTCAGAGACTGGCATAGATGGAACAACAATACCTCGACTTAGGactgttattatatattatattcaggTAATTTGGGGACTTCAGAACATCTGTATTCTGGgtgctgtgttaaaaaaacaatgtaacacTTTACTTTAATGTGAACTAATGTATATGGCATTTGCATGAATAATATTTGACAAAGGCATCAGAAGTACCCGTCACCATAAGCTATGTACATACAGTAGGTAGACTTCTCCCTCCTTGTGTCCGCCATGTAAATATGTACTAATGTCTTGAGTGGGGAgcactgtgtgtcagtgtttttgtgtAGTACTCAGATTCTGTGTTGATACATCATTGAAGGCTGGTATGCTCTTTATTGGTCGAGAAAACGTCCACAAAGCTGATTCGCGTGATGAGAAAAATGTAGAGCAATGTAGAGCTGTCTTGTTTGGAGAGAGCGATTGATTTCAGTAGCTTCTGAGTGTTCGCAAAGATCTGTCTTCGGGCAGGTTTTTGATTGCCCTTCTTGCGATTGTCCAGCCTGATTCGTGAGCTACATTTCCCACATGAACTCAGGaaagaccaaataaaaaattaacCAATACATAGCCCTTATACCTGCCCTATGAGTTCAGTAATGCTGCCAAGTGTCAATAAATGTTTAGAAGTCTTGTAGTAATTTATTCAAGCATTCTACTAAGGATGTGTTGGCGCTGTAAATTGATAAAACCTCTTTGATTACATTCAATATGTCCTGACATTTCCTCTGAAATCTACAGGTTCTTTGtgaaaaccattttttttaatgtattggaaATTATAAACTGGTATTGGATGCTTTTTGCTGCTATTAAACTTAAAGTGCTCAATATTTTTTAGgtatgctttcattttcatGAGAACAGGAGTCCAGACGCATAATATTCCTGGCCAGGATCAATGGTCTGTATAGGTTTAGTGTGAAGGTAACCTTTATTATAGCTTCTCAGCACCTCTACATTTATCTTACATTTTGAAGTTACAGAGCCCAACCTTGACATACCTCACTGTCAATTTGCTGCCTTGGTTAGCTTTAATTATGGAACCTCTTAGTAGTCTGATATCTTACCTGGTGAAAAGCCAACTCACAGAATACTGTTTAATATCACAAATTGCAACAGCTTTGCACACTAAGCAAAAATGTGTCCGCAGTGGCTCTTTATATTAGGAAGACCATTGAAGCTTAGAAAAGAATTGTACAGCTGCGCACCCTCATATGGTCTgcaatatgtattgtattgacACTATCAATAAAATGGTGTATTTAgacatgtatgtgtttattatgtaaatcaaGGAACATAGGAGCCAAAATAGAATGCTTATAATGTGCAAGTAAAACAATACGTGCATCAGGGATGGGATTGCAAATTTTCCTTCATTACCAGTACTGTCACTATGAGAAGTGGATGatgttaatgtaaaatatgatgTAAAAATCGTTCTTTTAGTATTTTGTAAATCATGGTGTTATGGTACATCTGCATGTACATAATATGGGCATACGCGtgtcagattaaatcaaattgatTGCCAAGGAATCACTGTGATTTTCTATATACCTTAATATGCTTTAAGAGAATGAAACGTTTCTCGGTAGAATTAAATGCGAACTCAGTAAGTATAGACACCGAAAGCATGTTTATTTCAACCTTACACCACGTGTgagaaaactgaactgaaatggaGAGCATATGAAAGCTGTTTGCTGAGCCTTTATTCTAATCTGGACGTGTTTGATACAGACTTGTATTGTGGACAAATAAAACGTTTAACATGAA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021661 True 3516 mRNA 0.44 13 24237275 24256623

Neighbor

gene id symbol gene type direction distance location
AMCG00021660 fkbp14,LOC106943903 coding downstream 16597 24215868 ~ 24220678 (-)
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding downstream 163303 24056803 ~ 24073972 (-)
AMCG00021653 NA coding downstream 182403 24052590 ~ 24054872 (-)
AMCG00021650 NA coding downstream 294660 23934484 ~ 23942615 (-)
AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding downstream 344629 23885292 ~ 23892646 (-)
AMCG00021663 NA coding upstream 5278 24261901 ~ 24277596 (-)
AMCG00021666 ankrd28 coding upstream 22969 24279592 ~ 24307071 (-)
AMCG00021667 NA coding upstream 110102 24366725 ~ 24369123 (-)
AMCG00021669 NA coding upstream 125414 24382037 ~ 24412448 (-)
AMCG00021670 NA coding upstream 179584 24436207 ~ 24445238 (-)
G87428 LOC103376870 non-coding downstream 103964 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 160168 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 749063 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 755375 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 865083 23371190 ~ 23372192 (-)
G87495 NA non-coding upstream 22014 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 289459 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 730819 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 731778 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 1155781 25412404 ~ 25460562 (-)
AMCG00021662 NA other downstream 27070 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 738514 23495025 ~ 23498761 (-)
G87263 NA other downstream 898791 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 904307 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 1076284 23155187 ~ 23160991 (-)
AMCG00021668 NA other upstream 86277 24342900 ~ 24363459 (-)
G87674 NA other upstream 1147027 25403650 ~ 25406538 (-)
G87806 NA other upstream 1648821 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1834604 26091227 ~ 26105391 (-)
G87871 NA other upstream 1895482 26152105 ~ 26154375 (-)

Expression


Co-expression Network