AMCG00021663


Basic Information

Item Value
gene id AMCG00021663
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24261901 ~ 24277596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021663
tggaatctgattgactgattgcttctgtggacaggtgtcttatATACAgataacgagctgagattaggagcactccctttaagagagacacctgggagccagaaatcttgctgattgataggggatcaaatacttttttccctcactgtagttcttactaacacacaacatcacaaacaaaattgtttatttttatttgagaagaaaaaaaatgaattctctCCAAGTTCTGAAAAACTTTTGATAAAACATCCTGCCACAGTCCCAGTCTTGAATTGCAAATGAAGGACATGTACTGCACAGTTACTCCAAAGCAGAAGCACTTCAGATGAAAGACCGAATAAAAACCCTtttatacaaaacagaaattcaAACATCTTTTAGAACAAAAGACCATGTAGGATGTAATCAGTGTCTGACCAATTTTAGCGATGCCCATAAATGATTAGGCATTACTATTCATATTCAAGTAATGCTCCAAAAATGTTCTTCATGCATTTCAGGTTCTCAAATGGATGAATTGTCAAAACACATCTCAAGATAATCTGAAGGGATGTTGCTCTACTCTTCTCTTTATTGTAGAATATAATGATCGTttcttgtgtatatataggtatataatTACGACATAGTTTTACATAGTGCCCAGCAATGCCCTGGCGTCGCGTCCTGGGTGTAtccctgccttgcgccctatgcctgctgggatcagctccgGCTTCTCCGcgaccctcgccaggataagcggtttcgaaaatagaaggatggatggatggatggatgtttaacatagtttattttaacaaagtttATTGTATAGAGTgcattgtatattatttattgcacCTCTATTTCCTATGCTTCCCAGTACTTTACCTTTGCACAATCATTTTGTTGCACTGAATGTTTGTTGCATTTTGCAATTCTGTTTAATACTGTGCTTGCTTTTATAGTTACCTATTATAATAagattattatgaattaatattatgatagtatcaattttttattttatttatttttttaagcattcacTAAAATCAGATCCCCAGACTTTCAGTCCTTCTCGTAATGTCTTCCATACAGTGTAGCTGTGACAAGGCCaccagaaatgtgttttttactCATGACGTAGCTCTCCTTCTCCCAACCCACCCTGTCTGGGGAATCAAGCTGCATGCCACTGGTTAGGATACTGGGGTAAATGTAACGGGTGCTAAAGTTGCCCTCTAAATGGAAATCTATTGTGGTGATGGTTTGATCTCCAGCAGTGACCTCCCCCCCGCAACTGGCAAAGGTGTCACCAGGACATCTGACCAGAGCGCACACCTCTAGATAAAATTGTCGAGCGGCCGTGTGTAGGCCATTGAAGACTCCAAAAGCGTAGAGCTCCTCAGGGACATGGGAGCCATTGTACAACAAACGGCAGCACAATGAGCCATCGCACACGGTCAAATCTCCCTCTGCTCCTTGTACAGGAACAAAGGTGTAATTATCTGAACTCATACTGCCATGGAATGTTCCAGGGGCTGCCCCATCTGCTACAGGTTTTGATGCTGAGGGTTTTCCACAATCCTGGGACTTCATGCAGACCTCGGAGGTAGGTGGTGAACCTGTCTCAGAGTCAGTAGGGAGTGAAACATTGCTCACCAGCAGTCTGCCTTTATCCGTTTCCATGTCAAAGTGGTAAACTGAGTGTGAGGGCGTGAAAATGCCACTCCCAGTCATGCGGAGTGGAGGGTGATGCAAATTAGCTGCTAGGAGGTTAATTCCCGAACCTGTGGCAAATGCTTTCTGGAACTGATGCGCAGACAGCAGGGGGGCTTCGTTAAACCAGGCCGTGGGAAagatcatttgttttacttgatACTTTTCTAGAAGGGTAATGACCGGTTCGTGGAAGAGAATGTCGAAACACGTGAAGAGGCCAAACCTCCCGGCGAATGGAGTGTCAAATGTGACGTACTCGCATTCTCTAGGGGTGTTAAATTCAGATTCAAAATACAGGTTTTGTTTATGATACCTGGCCACTATTGTTCCATCATCACTGAAGACGACATCCGTATTGAACTGATATCTGCCATCTGGGGGGCAGTGTGGATCTGTGCTGTCACATTCTTGGCGATCGGGCATATTTGCCACTAAATACACTGCATGCTTGTGTGCCATACAGCTCAGCCGATGAAGAACCTCAGTGCCATTGAACCTCTCTGGCTGAAGACAGGGGCTCCAGCTCATTGAGGCCGGATCAGGAATCGTCTCCGAATACGAAACAATGGACTCTCTAGTGTAGTTGAAACCATGGAGTCCGTCTTCTGGAAACACTATTATCTGTGCGCCCTGTTTTGCAGCTGCAGCCACTTGCTCTTCATATATATCCAGGTTCTCTTTCATGTGATCCAGCGCTGCCTGGCGACTGCGAGGAACCTTGGGGTCGGGGTTAAAGATGATGTTGTGCTCATAAACAGCAGCGATATAATGGGCTCCTTCGCTGGCCTGGGAGAGCCCaaaggagcactgccagagagCAGCGATCTTTATCAGCACAGACAGCTGCATTGTCTTTGGCAAACTTAAACAGCACAAACTCACACATTACTTCCCTACATCTTCTCTTCGACAGACTCCgggcactttttattttcttcgaCACCTGCGTACTTACGTCACACGTTCGTTCCCAGTGCAATCCTGATTGGCTTGACGTCTCTTACGTCACGCACGTACGATTGCTGATTGGTCGATACGTGCTCACGCCCTGGGTTGTTGTTGGCACTTTGCACCCTGATCTTTCAAATTCATTTCCCAGccagagacggagagagatggaggagatAACAGGAGCTCAGATAATTGCTGAGGCTCTCAGAGCGCAAAATGTGGAATACATGTTTGGGATAGTTGGTGTCCCTGTGATAGAAGTTGCAATGGCTGCCCAAGCTGCAGGGATTAAATACATTGGGATGAGAAACGAACAAGCGGCCTGTTATGCTGCCTCTGCTGTGGGATATTTAACAGGAAGacCCGGAGCTTGTCTGGTTGTTTCTGGTCCAGGACTCATCCACGCTTTAGGAGGAATGGCAAATGCTAACATGAACTGCTGGCCGGTGGTCGTTGTTGGGGGCTCCTCTGACCAAAACCAGGAAACAATGGGAGCATTTCAAGAGTTTCCACAGgTAGAGGCGTGTAGACTATACAGCAAGTTCTCTGCAAGACCCAGCAGCCTAGAAGCCATTCCAGCAGTGGTTGAGAAGGCGGTCAGATGCAGCACATATGGCCGTCCAGGTGCCTGTTATATTGATATACCTGGAGACATGGTAAATGGCAGAGTGGAGAGGGCAAAAAGTTGTGCCATGTTGCCTGCCACCGCCTGTGTCCCTAGCAGAGCCCCAGGCCATCTCTCAGgtgcTGCCTATGCCCATGCTGAAAGTAACATCCAGAACCTGTTGGATCTTACTGGGTTTCCATTTTTGCCCACCCCAATGGGCAAAGGAGTGGTGCCAGACAGCCATCCAAACTGTGTGGCAGCTGCAAGATCCAGGGCTCTTCAGCAGGCTGATGTGATCTTGCTTCTAGGCGCCAGACTGAACTGGATGCTGCACTTCGGTGTTCCTCCACGCTTTCACCCTAATGTGAAATTCATTCAGGTGGATCTGTGTGCCGAGGAGCTGGGCAACAACGTCCGGCCGGCTGTGGCTCTGCTAGGGGACGTCAATTCGGTTGTTGAACAGTCGTCGGTTCCCATGAACTACTATACTGTGTTTCACCACGTCCGAGAGCTGCTGCCAAAGGACTGTGTCATAGTCAGTGAGGGAGCAAACACCATGGACATAGGACGCACCATGCTTCACAACTACCTCCCACGCTGGACGCTGGCACGTTCGGGACAATGGGAGTGGGCCTTGGATTCGCTATTGCTGCTGCAGTTGTTGCCCGAGAGGAAGACCCTGCAAAGCGTGTGGTACAATTTACCAATAATCATCATTGTTGTCAACAACAACGGGATATACAGTGGACTTGATAAAGACACAtggaaggaaatggaaaaaattgGAGATCTAACCAGTGTTGCCCCCCCCGTGTCCCTTCTGCCCGAGGCCCGGTACGAGCAGGTCATGGCAGCGTTTGGGGGGAGAGGATTCTTTGTCCAGACACCTGCTGAGCTGCAGGAGGCCCTCAGGAAGTGCCTGGCAGACCCGGAGAAACCCTGTCTTATCAATgaCTTTCCCTGGCTGACCCGCTCTAATCTGTGAGGCGTTGAGAAGAGCTTTCACAGACCTTGTCAAGTCAGAACAAATGATGGTCACAGATCAAACCATTAAAATTGTATcatatgtaaatgaaaa

Function

GO: NA

KEGG:

id description
K12261 HACL1; 2-hydroxyacyl-CoA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021663 True 4346 mRNA 0.47 19 24261901 24277596

Neighbor

gene id symbol gene type direction distance location
AMCG00021661 NA coding downstream 5278 24237275 ~ 24256623 (-)
AMCG00021660 fkbp14,LOC106943903 coding downstream 41223 24215868 ~ 24220678 (-)
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding downstream 187929 24056803 ~ 24073972 (-)
AMCG00021653 NA coding downstream 207029 24052590 ~ 24054872 (-)
AMCG00021650 NA coding downstream 319286 23934484 ~ 23942615 (-)
AMCG00021666 ankrd28 coding upstream 1996 24279592 ~ 24307071 (-)
AMCG00021667 NA coding upstream 89129 24366725 ~ 24369123 (-)
AMCG00021669 NA coding upstream 104441 24382037 ~ 24412448 (-)
AMCG00021670 NA coding upstream 158611 24436207 ~ 24445238 (-)
AMCG00021673 NA coding upstream 275421 24553017 ~ 24568180 (-)
G87428 LOC103376870 non-coding downstream 128590 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 184794 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 773689 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 780001 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 889709 23371190 ~ 23372192 (-)
G87495 NA non-coding upstream 1041 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 268486 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 709846 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 710805 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 1134808 25412404 ~ 25460562 (-)
AMCG00021662 NA other downstream 51696 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 763140 23495025 ~ 23498761 (-)
G87263 NA other downstream 923417 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 928933 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 1100910 23155187 ~ 23160991 (-)
AMCG00021668 NA other upstream 65304 24342900 ~ 24363459 (-)
G87674 NA other upstream 1126054 25403650 ~ 25406538 (-)
G87806 NA other upstream 1627848 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1813631 26091227 ~ 26105391 (-)
G87871 NA other upstream 1874509 26152105 ~ 26154375 (-)

Expression


Co-expression Network