AMCG00021666 (ankrd28)


Basic Information

Item Value
gene id AMCG00021666
gene name ankrd28
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24279592 ~ 24307071 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021666
ATGAGCCGTGTGTGCATTGTTGTTTTAGAGGAGGTGGAAGATGATCCCTCCACGTTTGTTTCGAAAGTTGCTCAGGACCGTTTTCCCCTGCCTGCTTCCAATACAAGTACTCAGGACATAAAGCCACCACTGCTGAAAGCTATATTTAATGTGGATCCGGATGAAGTTCGCTCCCTCATATTCAAGAAGGAAGATGTAAATGTACaggATAATGAAAAGCGAACCCCATTGCATGCTGCAGCCTATCTTGGAGATGCAGAAATTATTGAACTCCTTATTTTATCAGgggCTAGAGTAAATGCCAAAGACAACAAGTGGTTGACTCCTCTGCACAGGGCTGTTGCTTCTTGCAGCGAGGAAGCAGTGCAGGTGCTGCTGAAGCACTCGGCTGACGTCAACGCCCGCGATAAAAACTGGCAGACGCCTTTGCACATAGCTGCAGCCAACAAAGCAGTGAAGTGTGCCGAGGCCCTGGTACCACTCCTCAGCAATGTCAATGTCTCGGACCGGGCAGGGAGAACTGCGCTACACCATGCTGCCTTCAGTGGTCACGTGGAGATGGTAAAGTTGCTACTGTCCAGAGGTGCCAATATCAATGCCTTCGACAAGAAAGACCGCCGTGCTATTCATTGGGCTGCTTATATGGGCCATATTGAGGTCGTTAAACTTCTCGTGACACATGGGGCCGAAGTGACCTGTAAAGACAAGAAAGCCTACACCCCCCTGCACGCTGCAGCCTCTAGTGGGATGATCAGTGTGGTGAAATACCTTCTGGACCTTGGAGTGGATATCAACGAACCAAATGCCTATGGAAACACACCGCTGCACGTGGCTTGCTACAACGGACAGGATGTTGTCGTGAATGAGCTCATAGAGTGTGGTGCTAATGTCAACCAAGTGAACGAGAAAGGCTTCGCTCCTTTGCACTTTACTGCCGCGTCTCGGCACGGAGCGCTGTGCTTAGAACTTCTGGTTGGTAATGGTGCGGATGTCAATATCAAGAGTAAAGATGGGAAAACTCCTCTGCACATGACCGCCATCCACGGCAGATTCTCCAGGTCACAGGCGGTCATTCAAAGTGGTGCCGAGATAGACTGTGAAGATAAGAATGGCAATACCCCTTTGCACATAGCTGCTCGATATGGCCACGAGCTGCTTATAAACACTTTAATCACCAACGGCGCTGACACTGCAAAGCGGGGCATCCACGGAATGTTTCCTCTACATCTCGCAGCGCTGAGTGGCTTTTCAGACTGCTGCCGGAAACTGCTGTCATCGGGCTTTGACATTGACACCCCCGATAATTTTGGACGAACCTGTTTAcatgctgcagcagctggagggaACCTGGAGTGTTTGAACCTTTTGCTGAACACTGGGGCAGATTTCaacaaaaaagacacatttGGAAGGACTCCTCTACATTATGCCGCTGCCAACTGTAACTACCAGTGCCTGTTTGCTCTCGTGGGATCTGGAGCCAGCGTGAATGACCTTGATGAGAGGGGCTGCACACCGCTGCACTACGCGGCTGCATCGGACACAGATGGAAAGTGCCTGGAGTATCTACTCCGGAATGATGCAAACCCAGGGATCCGGGATAAGCAGGGCTACAATGCTGTGCATTATGCTGCTGCCTACGGCCACCGCTTGTGTCTCGAACTGATTGCGAGTGAAACCCCTCTGGATGTGTTAATGGAGACCTCTGGGGCGGACATTCTGAATGACTCTGATGCCAGAGCACCAATAAGTCCACTGCACTTAGCGGCTTACCACGGGCATCACCAGGCCTTGGAGGTGCTGGTCCAGTCCCTGCTGGACTTGGACGTCCGGAACAGTAACGGCCGCACACCGCTGGACCTGGCAGCTTTCAAGGGCCACGTGGAGTGTGTAGATGTGCTTATCAATCAAGGGGCGTCCATCCTGGTTAAAGACTATACTCTGAAGAGGACCCCCATCCATGCAGCAGCCACCAATGGTCATTCTGAGTGTTTGCGGCTGCTCATTGGAAATGCCGACCTTCAGACCGCTGTTGACATTCAAGATGGGAATGGCCAGACACCCCTGATGCTGTCAGTCTTAAGCGGACACACAGACTGTGTTTACTCATTGCTGAACAAGGGAGCAAATGTGGATGCCAAAGACAAGTGGGGGAGGACAGCTTTACACCGAGGGGCGGTGACTGGACACGAGGAGTGTGTGGAGGCGCTGCTCCAACACAGTGCGAACTTCCTCATCCGGGACTGCAAGGGCCGGACACCGGTGCACTTGGCAGCAGCATGCGGCCACATCGGGGTCCTGGGAGGACTGCTGCAGGCCGCGCAGTCTGTGGAGACCCTCCCCATCATCACGGACAATCGCGGCTACACCCCACTGCACTGGGCCTGCTACAACGGTCACGACACCTGTGTGGAGCTGCTGCTTGAGCAAGAGGTTTTCCACAAAATGGAAGGCAATTCATTCAGCcccctgcactgtgctgtGATAAACGACAATGAAGGAGCCGCAGAAATGCTTATTGACACACTGGGCGCAACCATCGTAAACGCCACTGATTCGAAAGCCAGGACTCCCCTGCACGGCGCGGCCTTCACGGACCACGTGGAGTGTCTACAGCTGCTGCTCAGTCACAACGCACAGGTCAACGCCGTGGACTCGTCCAGGAAAACGCCGCTAATGATGGCGGCAGAGAATGGGCAGACCAATGCCGTTGaagTGCTGGTGAGCAGTGCCAAGGCAGATCTCACCCTACAAGATGCTAACAAAAATACAGCCCTGCACCTGGCTTGCAGCAAGGGTCATGAAACGAGTGCCTTGTTAATACTGGAGAAGATAACCGACAGGAACCTCATCAACTCAACAAATGCAGCTTTACAGACACCCCTGCATGTGGCTGCGAGGAACGGCCTCACCGTGGTGGTGCAGGAGCTGCTGGGGAAAGGGGCCAGCGTGCTCGCTGTGGATGAAAATGGCTACACACCCGCCTTGGCATGCGCCCCGAACAAAGACGTTGCTGACTGCCTCGCCCTGATATTGGCCACCATGATGCCTGTATCTCCAAGCACTACTATGCCCAGCCTCAGTTTCAATGCCATTAATCACTACACCAACCCTTCGAAGACTGTGACCTTTGACACGCTGCCCATCTTGAGAAGCGAACACAGCTCTTACTGCAGCTTCAACAACATCGGCCGGGAGGACGGGTACTCGTACAACGAAGACGACGAGCTCAACGACTCGGACTCTGAGACCTATTGAGCCGAGGGAGGCGGTGTCTGAAGCGCACCCCTGTCTTACTGAGCAGGAGCCCAGCTCTTGAACAGCCGCATCTTTGACCCAAACAGCTGAACCAGATTTCATTGGCTGATGTTCGTGGGAAGTGTTTCTCAAAGGGCCTTAAGAGTCGGACCTGGAAGGATGCCGAGTTTCGAAGGAATTGGGGAAGAAGCGGTTGAAGAAAACGAGAAGCcaattactttctttctttaccGTACCATTTAATTTGCAGTGCCAGAAGTCATTTCAGCAGTGTACACTActattaaatgtgttgttttcaaatCAGAGTTTTAAAGTGAGACTGGGACTATACGAGTAAAACGATCGATTTCTCTTAAGGCAATAATCCGGTTTGGGATATTAGCACTTGAAGAATAAGTTGCCAAAGGGACCAAaagtttcaaaagcatttttaaccCATTGTCAGGAAGAATAGGATTCAGTTTATATTCCAATATGTGTAAGTCAAGATTAATTTATTCTAATGGGAAGATGAAGTACTTACTAATTGTTTGAAAATCATTAAAGGATTTGAAAATCCAAGCCTCTGAGACCTACAACGTATAGAATATATATGGGGACAAAGGAACCTATTTTTGAGACAAAATTTTAACATGGCCTTGTCATGCcttttctaatataattttgaGACCAGCGATCATGGTACAGTCAGggttatacattttacattataaataaacatccaGACCTTTTTGGAAAATCACTATGGACAttgatttactgtatttttatttggcagTATGTTCTTGAAAGATGTGAGCAACTTGACTTCAAGGGCGACAAAGtgcaacagcaaaataaatctcACCTTTTCAATATTGTGGCCCCagtcatatttttctttcaataaatgctttttttttttcatttgtgtgcGATATCTGTACATTCGATTTGTGTTCCATGTGCCTTCATGGTTTTAATGCGTGGGGTCGGGGTGTGTAAACGGCCAAAGAAACATGGCTGTCTGAGTTAAGCTATGTTTTTTAGAGACCCCaacatgattttaatttcaacactaaTTTCATGTAAAACAATGATACTGTGTTAAAGCAAGTCACTGCAAGCATGATTTGCTTCGTACAGAAGAAAACTGTAAATACCAATGACAGGTTTGCATTGGATTTTACCTTTTACCtgatttgttttagttgtttgttttgctcttaaCATCAATGCCATTTCTACAGGTTTTGCTTGCATTAGTTTTTACATGCAAGACTACCTTAATCTTGTATGTGATTTGTtagagcaaaaagaaaaaaaatcttctatttttgttttattttaaatgcattttaaactggaATTCTGTACAGAATGTCAGCtggttttctgaaaacaaacgtGTGGCACAGGACGACttggtttattacattttgtgatttttctttttcttttgaagagaTGAAATTCTAGCATGTATATAGGAAATAGTGACTGCTTGGATACTATACCTACCTGCACTCTTTAAATACATCTCTGagatttctgtatattttatggataataaaatccaaatgtgggttatatgtaatttaatagcTCATTTGTGTTGTGgtaatttcagattaatttgGCAATTCTCTATAGCCTTAATCCCCCGCTCCCCCATTGGGGGCAGATAACCCCTTCAACAATCTTCTTTGCCCCTCCCAACGCACTGCAGCGCTCGCTGTGGTGCAATTGGTGCCGTGTTATTGTAGAAAGCAGAATCGATTCATTATCGTTTCAGTCCTCAGAGCCTTTATGATTCTAGATTAGATTGAAAAATTAGGTGAGTAAACTTGCAACAATAGTGTAAATGGGTTTGTCACACTCCACCATTTGGACCAGTATTTGAAACCTAATGTTATGTGTTTTAACCTGGTCTTCACATTAACCAAGCTAGATTTAAATTGCTGTACcataaacttttt

Function

symbol description
ankrd28 Predicted to be located in cytosol and nucleoplasm.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

GO: NA

KEGG:

id description
K15502 ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021666 True 5219 mRNA 0.47 28 24279592 24307071

Neighbor

gene id symbol gene type direction distance location
AMCG00021663 NA coding downstream 1996 24261901 ~ 24277596 (-)
AMCG00021661 NA coding downstream 22969 24237275 ~ 24256623 (-)
AMCG00021660 fkbp14,LOC106943903 coding downstream 58914 24215868 ~ 24220678 (-)
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding downstream 205620 24056803 ~ 24073972 (-)
AMCG00021653 NA coding downstream 224720 24052590 ~ 24054872 (-)
AMCG00021667 NA coding upstream 59654 24366725 ~ 24369123 (-)
AMCG00021669 NA coding upstream 74966 24382037 ~ 24412448 (-)
AMCG00021670 NA coding upstream 129136 24436207 ~ 24445238 (-)
AMCG00021673 NA coding upstream 245946 24553017 ~ 24568180 (-)
AMCG00021674 NA coding upstream 287826 24594897 ~ 24609459 (-)
G87495 NA non-coding downstream 205 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 146281 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 202485 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 791380 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 797692 23433216 ~ 23481900 (-)
G87573 NA non-coding upstream 239011 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 680371 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 681330 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 1105333 25412404 ~ 25460562 (-)
G87707 NA non-coding upstream 1224402 25531473 ~ 25531759 (-)
AMCG00021662 NA other downstream 69387 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 780831 23495025 ~ 23498761 (-)
G87263 NA other downstream 941108 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 946624 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 1118601 23155187 ~ 23160991 (-)
AMCG00021668 NA other upstream 35829 24342900 ~ 24363459 (-)
G87674 NA other upstream 1096579 25403650 ~ 25406538 (-)
G87806 NA other upstream 1598373 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1784156 26091227 ~ 26105391 (-)
G87871 NA other upstream 1845034 26152105 ~ 26154375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009841 ankrd28b coding NC_007127.7 CM002900.2 20055878 ~ 20154859 (+)