AMCG00021668


Basic Information

Item Value
gene id AMCG00021668
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24342900 ~ 24363459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021668
ATGGACTTTGTAGACAGTTTCGGAGATTGGACACAGACCCAGTGGTGTCCCGGCAGCGGTGTCCTCAAGTCCTTCCAGCTGAGAGTGGAACAGCCTCAAGGGTCTGGTGATGACACTGCGGCCAACAACATTAGGTTCTGCTGCAGCAGCAACCAAATTATTGAAGGGCAGGGTCTCGGCTGGGGAGAGTACGGCAGCTGGAGTGAGGAATGCCCACGAGGAGGGATCTGCGGCATAGAAACCAAGCAGGAGCCAAGGCAAGTATCTTGTAACCTGGAAGAGACCAGCTTTGTGCAAAGAGCGGGGACAATTTTTGCAGAGAGAGCATACTACTCCACTATAAACGTCACCAACGGAGGACAGTTTGGAGCATGGACTTGGCGAGAAATGTGTCCAGAGGGCTTCTATGCAATAGGATTCAGTCTGAGGTGTAACCCTCAagtctttaatttgtttaccCTGAGATTCGGAGAGTGGACACAGACCTTGTGGTGTCCCAATGGTGTCCTCAAGTCCTTCCAGCTGAGAGTGGAGCCCCATAAAGGGCATTTTGGTGACGACACTTCGGCCAACAACATCAAGTTTCGCTGCAGCAGCAACCCAGTCATTGAAGGGCTGGGTCTCACCTGGGGAGACTACGGCAACTGGAGTGATGAATGCCCACAAGGAGGGATCTGTGGGATCGAAACCAAGCAGGAGCCGTACCAAGTAGGACTGGATGACAGCGCCCTGAATGACTCAGCCAGAAGGTCTCTGCCTTTGCACAATCCCGTTAACGCCAGCACAACTCACTTTGACGATGAATATGTTATACAGTGGCTCCAGCCAGCCTGGGTGACACTCACAGTGAGAGTCCATGAACACGATCACATCCCCGGAGGCCCGTGCCGCCCCCAGCCCCCGGCCTCCAATAACCCCCAAGCGCTTGTTGCTCCTGATCAGCTTCACGGCCTCAAGCTGGGCCACGTCCCTCTCGGACCCGTGCAGAGAGAGGTGCACAGGTTTGCCCAGATCCCCGTGAGTGGACTGCGACATGCCTGTCTCTTTTCTGCCTCCAGCCCTCAGCACCCTGTACCTCCCCTGCTTCGGATGATCTGCTTGACTTCTCAGTTTCGATGTGACTATGATCAGCTGGTCTTCCTTCAGCGATCCCAGGGAGGACAGTCCATCAAGGTCCAGAACATCGTCCACGGCGCAGGGACGCTCTTCGGGCTGGTGTCGCGGAACAAGAAGCGGCTTCTTGGAAAGTTCACCGAAAAGAGGGTCGAGAAAAGTCACCATCATCGCCAGGAACCCCAACACCAACCATAA
>TU109241
GTGTTGACTAAGGATGGAGGGGGCTGAGGGAGGACAGAGTGAGGAATACCACTGGGTAGAAATGATTAACTATGAAAGCTTGTAAAGTATATTCGATGTAGGTTAAGTATCTGGAGTCAGTCTGCCTTTTCCCTCCAGTGTCCCAGAGTTTGCAGATTGTAACTGTGTTGGAATAACGATGTTACTCCTTAGTTCTCTTTCCCTTCTTCTTGTGCTCTACCCTGGTAGCTTTCTTCAGCAAGTGGAAGCAGCCACTGTTGGGAGATCTTCCTATTCCAAAATATACGTCCCAAATGGAGGATGATGGGGATCATGGACTTGGAGAGAAATGTGTCCAGATGGCTACTATGCTATATGATTCAGTCTGAGGTTTCGGAGATTGGACACAGACCCAGTGGTGTCCCGGCAGCGGTGTCCTCAAGTCCTTCCAGCTGAGAGTGGAACAGCCTCAAGGGTCTGGTGATGACACTGCGGCCAACAACATTAGGTTCTGCTGCAGCAGCAACCAAATTATTGAAGGGCAGGGTCTCGGCTGGGGAGAGTACGGCAGCTGGAGTGAGGAATGCCCACGAGGAGGGATCTGCGGCATAGAAACCAAGCAGGAGCCAAGGCAAGGTGATGGTGATGACACAACCTTGAACGATGTGCGCTTCTTCTGCTGCGCTTAGGACTGTGGATCCAGCTCTGGTCACCACTGGCCTGGTGCACTCATGAAGGGCAATTTGAGATGGCTAATACTGGAGGACAACATCTGGACATCCATTCCTGCTGTCTTGGGAATCGTTACATCCCCCTGCAAGTTTTAAATaccagtttaaataaatgaaaaacaacaacaatgcttttgtcatttgatttctttttaatctgAATTTGAGAAATCCATATTAAACCT

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021668 True 1311 mRNA 0.55 7 24342900 24363459
TU109241 False 895 lncRNA 0.47 3 24359666 24363369

Neighbor

gene id symbol gene type direction distance location
AMCG00021666 ankrd28 coding downstream 35829 24279592 ~ 24307071 (-)
AMCG00021663 NA coding downstream 65304 24261901 ~ 24277596 (-)
AMCG00021661 NA coding downstream 86277 24237275 ~ 24256623 (-)
AMCG00021660 fkbp14,LOC106943903 coding downstream 122222 24215868 ~ 24220678 (-)
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding downstream 268928 24056803 ~ 24073972 (-)
AMCG00021667 NA coding upstream 3266 24366725 ~ 24369123 (-)
AMCG00021669 NA coding upstream 18578 24382037 ~ 24412448 (-)
AMCG00021670 NA coding upstream 72748 24436207 ~ 24445238 (-)
AMCG00021673 NA coding upstream 189558 24553017 ~ 24568180 (-)
AMCG00021674 NA coding upstream 231438 24594897 ~ 24609459 (-)
G87495 NA non-coding downstream 63513 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 209589 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 265793 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 854688 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 861000 23433216 ~ 23481900 (-)
G87573 NA non-coding upstream 182623 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 623983 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 624942 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 1048945 25412404 ~ 25460562 (-)
G87707 NA non-coding upstream 1168014 25531473 ~ 25531759 (-)
AMCG00021662 NA other downstream 132695 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 844139 23495025 ~ 23498761 (-)
G87263 NA other downstream 1004416 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 1009932 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 1181909 23155187 ~ 23160991 (-)
G87674 NA other upstream 1040191 25403650 ~ 25406538 (-)
G87806 NA other upstream 1541985 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1727768 26091227 ~ 26105391 (-)
G87871 NA other upstream 1788646 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 2310619 26674078 ~ 26718508 (-)

Expression


Co-expression Network