AMCG00021672 (plcl2,LOC106605271,LOC106582018,LOC107688208)


Basic Information

Item Value
gene id AMCG00021672
gene name plcl2,LOC106605271,LOC106582018,LOC107688208
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24514118 ~ 24522275 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021672
ATGGCAGTCAGGACTGTTCTTCTCTTTCCGCAGGATGGCTCAAggcagagaagagagaggaagaagactGTCTCCTTCAGCAGCATGCCAACGGAGAAGAAAATCAGCAGTGCCAGTGACTGTATCAATGCCATGGTGGAGGGTTCAGAGCTCAAAAAGGTTCGCTCCAATTCCAGAGTGTACCACAGGTATTTTCTGTTAGATGCAGACATGCAATCGCTGAGATGGGAACCTTCCAAAAAAGAATTGGAGAAAGCAAAGATTGACATTAAATCCATTAAGGAGGTGCGGACCGGAAAGAACACCGACATTTTCCGTGCCAATGGAGTTTACGATCAGATATCTGAGGACTGTGCATTCTCTGTCATATATGGGGAAAACTATGAATCCCTTGACCTGGTGGCCAACTCTGCAGATGTAGCCAATATTTGGGTCACGGGACTCCGATATTTGATATCTTATGGGAAACATACTCTGAACATGATTGAGAGCAGTCAAAACAACTTGCGGACCTTATGGCTGTCTGATCTTTTTGCAGAGGCTGATGTTAACAGTGTTAGGCAAATAGGCTTAGGTACAGCTGTTCAGCTCATCAAAAACTTAAATCCTGGActgaaaaatgtcaaaatagAGCTCAAGTTCAAAGAATTTCACAAAGCTAAAGATAAAATAGGGAGTGACGTCACAAAGGAGGAGTTCATTGAAGTCTTTCATGAGCTTTGCACCAGGCCAGAGATCTACTTTCTGTTGGTTCAGTTCTCAAGCAATAAGGAGTTTCTTGATACCAAGGACCTCATGATGTTTTTAGAAGCAGAGCAGGGGATGGCGCATGTTAGTGAGGACACCAGCCTTGAAGTTATCCAAAACTATGAGCCATCAAAGGAGGGCAGGCAAAAAGGATGGCTCTCCTTAGATGGCTTTACCAAGTACCTCATGTCTTCTGAATGCCATGTCTTTGACCCTGAACATAAAAAAGTGTGTCAGGACATGCATCAGCCCTTGTCCCACTATTACATAAATGCATCTCACAACACCTACTTGATAGAGGACCAGTTCCGCGGCCCCTCTGATATCACAGGTTACATCCGTGCTCTGAAAATGGGCTGCCGGAGCGTAGAGTTGGATGTCTGGGACGGCCCCGACAATGAGCCAGTCATATACACGGGACacacaatgacatcacagaTAGTCTTCCGTAGTGTCATTGACATTATCAACAAATATGCCTTTGCTGCATCTGACTTCCCTTTGATCCTTTGTTTGGAGAACCACTGTTCGCTTAAGCAGCAGAAGGTCATGTTTCAGCATCTGAAAAAGATTCTGGGGGATAAAATCCATGTGGATCCTCCCAATGTGGAAGAGAGCTATCTCCCATCACCTGAAGATCTGAAATGCAAGATTCTACTCAAAGCCAAGAAGCTTGCAGCCAACTGTACCAGCCCAGAAGGCGATGTGACTGATGAAGACGAGGGAGCGGAGATGTCTCAGAGAATGGGTAATGAAGCTGGGGAGCAGCAAATTGTGACACCTCAAAAACGGTTTCAGCTTTCCAAAGACCTTTCTGACATGGTGAGCCTGTGTAAATCGGTAGGGTTTAAGGAATTTCAGGTTTCTTTCCAGAACCAGAAATACTGGGAAATCTGCTCTTTCAATGAGGTCTTTGCATCTCGTAATGCCAGTGAGCAACCTGGGGATTTTGTCAATTACAATAAAAGATTCCTTGCCAGGGTTTATCCAAGTCCCATGAGGATAGATTCCAGCAACATGAACCCACAGGATTTCTGGAAGTGTGGATGCCAGATAGTGGCGATGAATTTCCAGACCCCGGGCTTGATGATGGACTTAAACATTGGTTGGTTCCGCCAAAACGGGAACTGTGGCTACGTGCTGCGTCCTGCCATCATGAGGGAAGAGGTGTCTTATTTCAGTGCCAACACTAAAGACTCTGTCCCGGGAGTGTCTCCTCAACTGCTCCACATTAAAATCATAAGCGGGCAGAATTTCCCCAAACCCAAAGGCTCGGGAGCCAAAGGTGATGTCGTGGACCCTTATGTCTATGTAGAGATTCACGGCATTCCAGCTGACTGTGCCGAACAAAGGACAAAAACCGTCAACCAGAACGGAGACAATCCCATTTTTGACGAGAGTTTTGAGTTTCAGGTCAACCTGCCTGAGTTGGCCATGGTGCGTTTCGTAGTGCTGGATGACGATTACATTGGGGACGAGTTCATTGGACAGTATACCATTCCATTCGAGTGCTTACAGCCCGGCTACCGGCACATCCCCCTGCAGTCCCTCACGGGGGAGGTGTTACCGCACGCCTGGCTCTTCGCACATGTGGCAATCACCAACCGCAGAGGTGGAGGGAAGCCCCACAAGCGGGGTCTCTCTGTGCGCAAAGGGAAGAAATCCAGGGAGTATGCCACCATGAGGATACTGGTGATTAAATCTTTGGATGAAGTCTTCAAGACTGCTGTCCAGCCATTGCGGGAAGCCACTGACCTCAGAGAAAACATGCAGAATGCAATTGTTCCATTCAAAGAACTGTGCGGTCTGTCTCCTGTGGCCAATCTCATGCAGTGTATCCTGGCCCTGTCCACACGCTTGATGAGTGGAGAAAATACCCCCTTTGTGATATTCAACCTTAAGGACCAGTATCCGACCATGGAGCCTCAAGCAACGATCCCCGAGATGCTGAAGAAAATTGTGACCGCTTATGATGCAGTAAGTACTGTCTGA

Function

symbol description
plcl2 Predicted to enable GABA receptor binding activity; inositol 1,4,5 trisphosphate binding activity; and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction; lipid catabolic process; and regulation of GABAergic synaptic transmission. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: inactive phospholipase C-like protein 2

GO: NA

KEGG:

id description
K15370 PLCL2; inactive phospholipase C-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021672 True 2739 mRNA 0.47 3 24514118 24522275

Neighbor

gene id symbol gene type direction distance location
AMCG00021671 NA coding upstream 56756 24444307 ~ 24457362 (+)
AMCG00021664 NA coding upstream 136630 24371867 ~ 24377488 (+)
AMCG00021665 NA coding upstream 160865 24342852 ~ 24353253 (+)
AMCG00021659 NA coding upstream 237578 24274095 ~ 24276540 (+)
AMCG00021658 LOC106574036,LOC103150415 coding upstream 281361 24220921 ~ 24232757 (+)
AMCG00021678 kat2b,LOC106588888,LOC106570503 coding downstream 465202 24987477 ~ 25007730 (+)
AMCG00021685 NA coding downstream 862521 25384796 ~ 25406102 (+)
AMCG00021684 rpl15 coding downstream 890670 25412945 ~ 25415148 (+)
AMCG00021683 NA coding downstream 896545 25418820 ~ 25432607 (+)
AMCG00021688 NA coding downstream 1070262 25592537 ~ 25615265 (+)
G87525 NA non-coding upstream 153209 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 252501 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 295294 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 374610 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 482001 24029844 ~ 24032117 (+)
G87704 NA non-coding downstream 1007049 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1310179 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 1363171 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 1568901 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 2187942 26710217 ~ 26713476 (+)
AMCG00021657 NA other upstream 315291 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 336026 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 1802974 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 2222977 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 3256929 21241666 ~ 21257189 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 387609 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 754501 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1230082 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 1321419 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 1629793 26152068 ~ 26197076 (+)

Expression


Co-expression Network