AMCG00021677


Basic Information

Item Value
gene id AMCG00021677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24975268 ~ 24986960 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021677
CGACAGGATGAAATTAAATACGGGCCGCAGTCAGACCTGCAGTTTCCTAGCATTTGTTGCCTGGCTACTTACCCTAAACATGATCTGAAATGCAGAACAATCCCAATACAACTCACACGATCActgcagatacacacacaccagcagacAGGAGGTTTTATGAGCATTTTATTACCAATTTCTCACTGAAGTCAGTTTAATGTGCAGTCTTCCTTTCAGTCTTCACAGGACACAGCAATGAGAGAAGGGAAGGCTGTATATGATGGGAAGTATAAGGATAGATTTCCCCGTATACAAACGgcAGGAAAGTTAATACCGACAGGCGAAAGAGCAGAGACGTGTCTTAAGGAAATGACACCCAGGCCTGTTACTCCTCCGGTGATTAAGAAATTCCTGAACACAACCAGGCCAGAGACGGGGGCTATCAGAGTGTTTTATGGGAAAGCCAATGATCCAGATGTAGCCAGCAGTCTTGTGCATGGTGTGAGAACAAGACCCTCCCTTAGTGCAGCATTGCTGACCAATCCATCTCCAAGAACACTCTTCCAACAAAAGCTGCATGAACGGCAAGAAGCTGTTTATTCAAGCCATCAGACGGCCCCACTTGGAAGATCACACAATCAAGCTTTGGGGTTGCCCAGTGGATTAGATAGAGAAAAAACTACATTTGGCCTAAAGACCATCCAAAGTGAAAATGCTGGTGAAATCCTTAACCCACCCAAGAGCCATGAACAGGTGGAGAAAGAGTATCAGGAAGGACACCAACTGTATGTCAAATCACACAATGCATACTTTGTTGGGGAACCTATAAACAGGAAGTATGACTCGAAGAAGTATGGTAAAAACAGCCAATTTGGGATTAAAACTACCCACTACAATGATGGCAGGAATGTCTCAAAATCTCTGCATTGGTTACACGATCTGCAAACGCTGAAAGGGGCAAAGTTGGTGTCAAAGTGCAGTGATGATTTCAGACAACGGACTCAGCCGCAGATCGGAAAAGTGCACGATCCGATTGCTGACACAATGAATGTTTCAGTCAACCACACATATGGTATTACGGTGCGTCCTGATGAATTTGGTGCTGGCGAACATTTGCATTACACTGCTCCTCTCGACATCCTGTGTGGGACAGACGGACATCGCGTCCTTCTCACTGCTGTGCGCCAGCACTTGAAAAAGGCGAACTTTCACAACTTCACTTCTCTACTTGAAGCATTCAGGCACTATGATAAGAACGGTAAAGGAGTTATTGACAAGACAGACCTCCACGATGTCTGCACACAGTTTAATTTGGACTTAAACCCCCAACTTCTAGAGACATTAATTGAGTTTTGTGATGTCAACAAAGATGGACAAATCAACTTCCTTGAGTTTTACGACTTCCTGAACTGGAAAGACAAGATGCCTGCTGAAGAGCTGGATGAAAGGATTATTACAAAAGGGCGTAAGCCAAACACCACCCCTCCACATTCACAGAGGAGCATGGGACTGAGGACGGACACGTTGGCAAAGCAGGAAGATTTTGGTCCAGCTGGTGCTGGTAACGTGGGTAGGACTCCCAGAACTCTAACAAGACCCAGCACAGTCCCTGACCGATTCCTCACCTCCTCATCGACAATCCGGGCCATTGTAGGAGGTCCTTCCACAACTAACTACCAGGTGTTTGGTGTTCCCACCGTCCGCACTGATTTAGCAGCTCCACGCATTAAGCGCATCAGCGACAGGACAAACTATGGCGATGAGTCCAATGCAGGTGGGCTGATCCACCCATCTCTCTACTCCCTGAAAGGAGTGCACGAGAAGCACTTTTTTATGCCAAGAACAAAGGAGGAGATTGCCCGTATATTCCGAAATGTTGGGGTGGATATTTCCGAAGATGACTTTGGAGAAGCTTGGGAACGGGCATCGACAAGACATCCAAGAGGACAAGTCTGTGTAGAGACATTCAGGAATGTTGTACAAGAAATTCTTGGCTCATATTGAAACATTATTTGACATCCATTGAGGcaattttacaattttgtttgcctgcattttctttaaatggcaATTAAAAGTTCAAACCTGCCTATGAATCCTTAAATGTATCCCTAATTAACTTCATTAACATgatggaaaac

Function

GO: NA

KEGG:

id description
K23929 EFHB; EF-hand domain-containing family member B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021677 True 2123 mRNA 0.45 13 24975268 24986960

Neighbor

gene id symbol gene type direction distance location
AMCG00021675 LOC107716986 coding downstream 172935 24766785 ~ 24802333 (-)
AMCG00021674 NA coding downstream 365809 24594897 ~ 24609459 (-)
AMCG00021673 NA coding downstream 407088 24553017 ~ 24568180 (-)
AMCG00021670 NA coding downstream 530030 24436207 ~ 24445238 (-)
AMCG00021669 NA coding downstream 562820 24382037 ~ 24412448 (-)
AMCG00021679 NA coding upstream 20730 25007690 ~ 25012760 (-)
AMCG00021680 LOC104951919 coding upstream 87387 25074347 ~ 25085082 (-)
AMCG00021681 NA coding upstream 215444 25202404 ~ 25203901 (-)
AMCG00021686 nkiras1,LOC106588667 coding upstream 419742 25406702 ~ 25411562 (-)
AMCG00021691 top2b,LOC106570304 coding upstream 695810 25682770 ~ 25704828 (-)
G87573 NA non-coding downstream 427145 24546082 ~ 24548123 (-)
G87495 NA non-coding downstream 695881 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 841957 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 898161 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 1487056 23482972 ~ 23488212 (-)
G87627 NA non-coding upstream 482 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 1441 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 425444 25412404 ~ 25460562 (-)
G87707 NA non-coding upstream 544513 25531473 ~ 25531759 (-)
G87717 NA non-coding upstream 670422 25657382 ~ 25657793 (-)
AMCG00021668 NA other downstream 611809 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 765063 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 1476507 23495025 ~ 23498761 (-)
G87263 NA other downstream 1636784 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 1642300 23329325 ~ 23332968 (-)
G87674 NA other upstream 416690 25403650 ~ 25406538 (-)
G87806 NA other upstream 918484 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1104267 26091227 ~ 26105391 (-)
G87871 NA other upstream 1165145 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 1687118 26674078 ~ 26718508 (-)

Expression


Co-expression Network