AMCG00021678 (kat2b,LOC106588888,LOC106570503)


Basic Information

Item Value
gene id AMCG00021678
gene name kat2b,LOC106588888,LOC106570503
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24987477 ~ 25007730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021678
CGGAAGTGTTCGTGTCTGTGTTTTGGTTCTAAAGGGGGAAGTTgcgagaaaaaaagaaaggaggagACGTGATCGGGTCTGGGCAAAATATACGTATTTGTACAGCAATAGGAAAGTTCATATTCGAAGAATTCCTGCCAAGACCCCCGTATTGGAAAGCCGTGTACATACATTTTCGCCTGGCCATCAGTTTTTAACTGAGAAAAGAAGGAAGACTGTGCTTATAAGTTCAGAGCAGGAGACTGGTCATGGCAAGTCGGGGAGGAGCAACAAGACCCAATGGACCAAATGCTGGCAATAAAATTTGCCAGTTTAAGCTTGTGCTTCTTGGCGAGTCTGCTGTTGGAAAGTCCAGTTTAGTGCTTCGTTTTGTGAAAGGGCAGTTTCATGAGTTTCAAGAGAGCACAATAGGAGCTGCTTTTCTGACGCAAACTGTGTGTCTGGATGACACAACAGTGAAGTTTGAAATATGGGACACTGCTGGACAAGAGCGTTACCACAGTTTAGCACCAATGTACTACAGAGGCGCTCAGGCTGCTATAGTTGTATATGACATTACAAATGAAgagTCGTTTGCACGAGCAAAAAACTGGGTAAAAGAACTTCAAAGACAAGCAAGTCCTAATATTGTAATAGCTTTGGCAGGCAACAAGGCCGATCTGGCTAACAAGAGAGCAGTTGACTTCCAgGATGCACAGTCATATGCAGACGACAACAGTTTGCTGTTCATGGAGACATCAGCGAAGACCTCGGTGAATGTGAATGAAATATTCATGGCAATAgAGACGCACCGAGCGACCGGGGAGTCCGTTTCGGGCTCGGTGTTTAGGATGTCCGAGAGCGGCGGCCTGCAGCAGGGCTCCCCGGCCGTGGGGGCAGCGGGCTCGGCTCCTGCTGCTCCCGGGGGAGGAGGGGCCGAGTGCTCGGGCGCTGCTGCGGGATCTGCTGGTATCGCCGCAAAGAAGGCGCAGCTCCGCTCCGCTCCTCGGCCGAAGAAACTGGAGAAACTCGGGGTGTATTCCTCCTGCAAGGCTGAGGAGTCCTGTAAGTGTAATGGGTGGAAGAGCCAGAATCCTCCTCCCACGCCTCCCAGGGTGGACCTGCAGCAGACAGCCGTCAGCCTCACTGAACCGTGCCGCAGCTGCAGCCACTTATTGGccGATCATGTTTCCCACTTAGAAAATATCTCAGAAGAGGAAATGAACAGGCTGCTGGGAGTTGCATTAGATGTGGAGTATCTCTTTACCTGTGTGCATAAGGAGGAAGACGCAGATACTAAGCAAGTGTACTTCTCCCTGTTCAAGcttttgagaaaatgtattttgcagatGGGCAAACCTGTCGTGGAAGGAGCTTTAGAGAGTCCTCCGTTTGAAAAACCAAGCATCGAACAGGcaagtaaaaatGGGGTGAATAACTTTGTTCAGTACAAATTCAGCCACCTTCCTTCGAAAGAGAGGCAGACAATTGTCGAGCTGGCCAAGATGTTCCTCAATCAGATCAACTACTGGCAGCTGGAGACTCCCTCTCAAAGGAGACAGTGCTCACCCATCGATGATGCTGCAGGATACAAAGTGAATTACACAAGGTGGCTGTGCTACTGCAATGTCCCTCAGTTCTGTGACAGCCTGCCCCGCTATGAGACCACACAGATATTCGGGAGGACGCTTCTCCGCTCTGTCTTCACTGTCATGCGACGGCAGCTGCTGGAACAGGCCCGGCAGGAAAAAGATAAACTCCCTCCCGAGAAAAGAACGCTCATCCTCACACACTTCCCAAAATTCCTGTCAATGCTAGAGGAGGAAGTTTATAGCCACAATTCACCGATCTGGAATGAAGATTTCTTGGCATCATCATCCACAAGTGTCCAGTTAGGGCTTCAGACTGTGATCAGTGCTCCTCCTGTGGCCAGGTCCTTTTCTTACAGTGCGAGCCCTGCAGCGCTTGATTCCTCAAACTGTGGGACCCTCAGCCCTGCCTGTAAAACTGCGTCTGCCATTGAGGCAAACCTAGGAGAAAAACGCAAGTCAACAGAACCCTTTACTCACGAAGAAACGAAGAGGCCAAGGGTTGTGGGAGATATTCCTATGGAATTAATAAATGAAGTTATGTCCACAATCACAGATCCATCTTCTATGTTGGGGCCAGAGACCAGTTTTCTCTCCGCGCATTCGGCAAGAGACGAGGCTGCCAGGCTGGAAGAGAGGCGTGGCGTGATTGAATTTCACGTAATTGGGAATTCCTTAAACCAGAAGCCAAATAAGAAGATCATGATATGGCTTGTTGGcctgcaaaatgtgttttcccaTCAGCTTCCCAGAATGCCTAAAGAGTACATTACACGACTAGTCTTTGACCCGAAACATAAAACCCTGGCACTGATCAAAGACGGCCGTGTGATCGGAGGGATCTGTTTCAGGATGTTTCCATCTCAAGGCTTCACTGAGATTGTGTTCTGTGCCGTCACCTCAAACGAACAAGTAAAAGGATATGGAACCCATCTGATGAATCATCTCAAGGAGTATCACATTAAGCATAATATTCTGAACTTTCTAACATATGCAGATGAATATGCCATTGGATACTTCAAAAAGCAAggATTCTCAAAAGACATAAAAGTTCCAAAAGCAAAATATGTGGGCTATATAAAAGACTATGAAGGTGCCACTCTGATGGGATGTGAACTGAATCCCAGGATCCCATACACTGAGTTCTCTGTCATCATAAAGAAGCAGAAAGAGATCATTAAAAAGCTGATCGAAAGGAAGCAAGCGCAGATCCGAAAGGTTTATCCTGGACTTTCCTGTTTTAAGGAAGGTGTTCGGCAGATCCCTATCGAAAGCATTCCTGGAATAAGGGAAACTGGATGGAAACCTGCTGGAAAAGGGAAGGAGCCAAAGGACCCTGATCAACTTTACAGCACCTTAAAAAATATCCTGCAACATGTAAAGACTCACCAGAATGCTTGGCCATTCATGGAACCAGTGAAAAAGACAGAAGCTCCAGGATACTATCAAGTGATCCGCTTCCCGATGGATCTAAAGACAATGACTGAACGTCTTAAAAACCGGTATTACACAACAAAGAAGCTGTTTATGGCAGACATGCAAAGGATCTTCACGAACTGCAGGGAATACAACCCTCCAGAGAGCGAATACTACAAATGTGCGAACTTACTCGAGAAGTTCttctacacaaaaataaaagaagcagGTTTAATTGAAAAGTGAAAGGCTTGCAGATCTCAGACCCCAGGTACATTTTACAAGTTACTCTGTTTACTCAGGTCAATATCActcaagaagaaaaatgtatagagTAACAGAATTCATAAAGACAGCAAATGGAGTCAGATCAATAATGGGATTTTCAAGTGTAAAAACATCCTCTGGAATCCTATGTCTGCATTATTCAGTAAGATACTCAACAGGTCCAGGAACACAAGCTGACATTGTTACTACGTGTGCATGACTTCTGCAATGTCTGTGTACATTTTCCCCATCAACGTATGTACTGGTCAGGGTCTTATGTTCTAATCATCCATCCTGCCAGAAATTCTTGTGAAGGGTTTTGTGTGGAGGGAGTCATCTCAGAAactacagcttttttttttcttcctcaaatTTTTACCCTCCATTCtgtttttcataaaaatgtgttCCACATTGTGAAAAAGTCCCACATTGTTTGGGCTTGAGGAAGAACTGaaacttattttaaagcaaatatgcaaaaaaaaaaaaaaaatacaaaaacaaaacaagagcatTTTCTGGATGTCgttttgtgttttaacaagAAAAACTAATGCACGCTTActgcttaatttaagtatctAGAAAATAATTCTTATTTATGTGATGTTATTTCAAGGGTTGTTAGTATAACTGAAGAAAAGGTCTTAATTTATTATGTCTGTCTTACGCTCTGCCCTGCAGAATAttgatacaaatgtattttgataaaGATTGTGCAATAATGAGtagctttgttgttttgtaagatgtttgtatttttaaatatttagaaagaaaatctGGATTTTGTAATATGTGGAACATATTTTAAGACCTTTctacttttgcttttaaaaagtttGCATATTTTATAGAAT

Function

symbol description
kat2b Predicted to enable peptide-lysine-N-acetyltransferase activity. Involved in histone acetylation; regulation of bone development; and regulation of cartilage development. Acts upstream of or within bone morphogenesis; heart development; and limb development. Predicted to be located in centrosome and nucleus. Is expressed in fin; head; heart; and nervous system. Orthologous to human KAT2B (lysine acetyltransferase 2B).

NR:

description
PREDICTED: histone acetyltransferase KAT2B-like isoform X1

GO: NA

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021678 True 4114 mRNA 0.44 23 24987477 25007730

Neighbor

gene id symbol gene type direction distance location
AMCG00021672 plcl2,LOC106605271,LOC106582018,LOC107688208 coding upstream 465202 24514118 ~ 24522275 (+)
AMCG00021671 NA coding upstream 530115 24444307 ~ 24457362 (+)
AMCG00021664 NA coding upstream 609989 24371867 ~ 24377488 (+)
AMCG00021665 NA coding upstream 634224 24342852 ~ 24353253 (+)
AMCG00021659 NA coding upstream 710937 24274095 ~ 24276540 (+)
AMCG00021685 NA coding downstream 377066 25384796 ~ 25406102 (+)
AMCG00021684 rpl15 coding downstream 405215 25412945 ~ 25415148 (+)
AMCG00021683 NA coding downstream 411090 25418820 ~ 25432607 (+)
AMCG00021688 NA coding downstream 584807 25592537 ~ 25615265 (+)
AMCG00021687 rarb,LOC107372434,LOC107700643,LOC107717720 coding downstream 624456 25632186 ~ 25678181 (+)
G87525 NA non-coding upstream 626568 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 725860 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 768653 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 847969 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 955360 24029844 ~ 24032117 (+)
G87704 NA non-coding downstream 521594 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 824724 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 877716 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 1083446 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 1702487 26710217 ~ 26713476 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 38377 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 788650 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 809385 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 2276333 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 2696336 22270871 ~ 22291141 (+)
AMCG00021682 NA other downstream 269046 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 744627 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 835964 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 1144338 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 1527363 26535093 ~ 26569148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_01741333_01755566 KAT2B coding CI01000321 null 1741221 ~ 1756358 (+)