AMCG00021683


Basic Information

Item Value
gene id AMCG00021683
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25418820 ~ 25432607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021683
ATGACTCAAGAGCCGGGCTGGGGGCGGAGCCGCCGCGGAGACTCTGGGTCACATGACGGCGCTGTGGGCAGCCAGTGTGCGAAAACGGCCAGTGCCTTCAGCTGGGAAGACATGGAATCCACTAAAGCTGGAGGTGTAATAGCCTACATCAGCTCCTCCAGCTCGTCCTCCAGCCCCGAGTCCTGCCACAGTGACTGCTCCAACAGCAGCTTCCAGtcctcctctccccccctccccgccTCCCCCAGCCAGAGGGGTGAGCTGGCAGCCGACGTCTGCGTGACCAGCAGGGCACAGAGCCACGGCCGGTACCACTCCAGCGCCAAGCCCGGCCGCTCAGCCTCCACAGCCAAATGTGGCATCACAAAGATCAACGGCATGGTCCTGCTGTGCAAAGTGTGCGGAGATGTGGCGTCGGGTTTCCACTACGGCGTTCACGCCTGCGAGGGCTGTAAGgGTTTCTTTAGACGAAGCATTCAGCAAAATATCCAGTACAAGAAGTGCCTTAAGAATGAAAACTGTCCCATAATGCGAATTAACAGAAACCGATGCCAGCAGTGCAGATTTAAGAAGTGTTTGTTGGTTGGCATGTCCAGAGATGCTGTTCGATTTGGACGCATCCCAAAGAGGGAAAAGCAGCGCATGCTTTTGGAGATGCAGAGCGCCATGAACAACATGATGAACAACAACCAACTCCATGGCCAGATGCTGCCCACGGAAACGCTCACTGGAGAGACAAGGGTCTCTCCCTCGCCGTCTTCACTCTCCACCTCCATCTCCCTCCCAGAGGAGCCTCAGCCCATCCATGAACCCCTTCAGCCAAACCCGGAGGAGATGGAGACCGCCCAGACCCCCTCATCCTCCAGCTCGGAcagtggagaggaggaggtCATCGGAACGGTCACCAGGGCCCACAAGGAGACCTTTATGTACAACCAGGAGCAGCCAAGTCCCTCGGGAGAAGACCAGCCTTCACAGTCTGGAGACGAGAGGGTGAGTGGCAGCGTGGAGGAGAAGCACATGGAGTGGAACAACAGGAACGACCACAGCAGCTTCAATGGCTACCAGCAGCTGGGCAGCGGGAACCCACACACCATCCACGGACTTCACAGACAGGAATCCCTGACATACTGTCCTGCCAGACAGGCGAATGGGCTCGGCAGTGGATGCTGTCCCAGTTATGTTAATGCTTTTTCTCACAAAGGCCACAATGACAATAGTCTGATTACCAACAGGGGTTTCAGTGGACCTGTCTGGAGCGggggaaacaggatgcacctgGTGTGTCCAATGAGCATGTCTCCCTTCGTTGACCCCAGAAAGTCGGGCCACGATATCTGGGAGGAGTTCTCCATGAGCTTCACCCCTGCGGTACGAGAGGTGGTGGAGTTTGCCAAGCGCATCCCCGGCTTCCGGGATCTCTCTCAGCATGACCAGGTCAGCTTGCTCAAAGCTGGCACGTTTGAAGTGTTAATGGTCCGCTTTGCTTCCTTGTTTGATGCAAAAGACCGTACTGTGACTTTCCTAAGTGGGAAAAAGTACAGCGTGGATGCCCTGCGATCCATGGGGGCAGGAGACTTGCTGAACTCAATGTTTGAGTTCAGTGAGAAACTAATTGCTCTGCAGCTCAGCGAGGAGGAGATGAGCTTGTTCACAGCAGTTGTCCTGGTTTCTGCTGATCGTTCTGGGATTGAAAATGTTAACTCAGTGGAAGCGCTGCAGGAAACTCTAATCAGGGCACTCAGAACCTTAATAATGAAAAACCATCCCAACGAAGTCTCCACCTTCACCAAACTGCTTCTGAAGCTTCCTGATTTGCGTTCCTTGAACAACATGCATTCAGAGGAACTGCTAGCCTTCAAAGTTCACCCATAgaccacacttttttttattttgtattaacatttcTGGACCCTTCTAATACATTCAGTAACTTTGTTGTATATTTCACTATAGAATGTTACTATTTATGTACacactttacattttccttcacaATCGCTATGTGGATGACATATTGAAGAGGCGGAACTTTGAATCAATATGAATCTTTGTACTGTATGGCTGATTTGCCAGTTGCGTAAAAGAGCGCACACTCAATAGCTCTGTGCATATTGTGCTCGCAATGGCAAACTTTCAAAAGCACCTTTTATTATCGAGAGAATAAGTAATGTACAATGTGAGTGCAATATGTGACCcgtttttgtcttttctttgttgtctttgtttagttttcagaGAGATGTATATTATTTCCAAAGTGTATTGCACACCACCAGAGTTAAAGTGTTCAGGCATAGGGAGGTTACTGTAGATGTTCAAAAGACGAAGTTTGTGCCTGATAAAACCTTGCATAATGCCTAGGTGGTAACGGGGGTTCAATAATGTTTAACCcctcagagaaaaaaaataataataataattttagaatGTGGTAATTGCTGCTAATGCATGGCTATCCTGTGTGATCGGGTATTGTGTACATTAACTGCCTGTTCTCAATAGAAAGCTTTGATCTGCAAGAAGTTTTAAAGTAGATGGATTGTATCCCATTATGGGAAGATACAGGACATTTCTCCTTTATTTCAGTTGTAGTTGTAGTGGTGCATTTGTGTATTAATGTACTGTTCTTAATGTTAGTGTGCTTCGGAAGTGATGATAAACATTCTGTAAATGGCAAAGAGATTCTAGACATTTGAAAGCTTGAACAGCTTTGTTTGGTTCTCCTACATTACATACAGAAAGTAGTTCCCTTccagctttttaatttttcagtCAGTCATGTAACAGTGTGGATAAAGATTGCTAGTACTTAAACAAGTAGTTATTGTATTACAGCAGGTTGTGGAGGGGTTGGACAGTACTGAATGTGGGAAAGTACACTGGCATGGGAAAAACCCTTTTGAAAGTCAAGTTGAACTGTTGTGGTAGTGCAAGCATGCCACCACTGTGGAGTGGTGCTACTGCTGCTGATCTTAAGGTGATTGTCACGTAGAGTCTTTTTAGATTCTTTGTCGTTGTTATCGGCAGCAGAAATGTCTTTTTATGACAAAGGCATCAGTCTGAAGGCAGATGTGCTCATACACAACTTGAATGCATGTGGGCGAGCGAGGTGAAATGACCGGGTAATACCTGTGTGAAAACTTCTCATAAGACCAGTGTTACATAGCTCAACTGTACTTGTAAAAAAACAGGAGTTACATTCCTCGTGTTATTACATAGAGCAGTAACTCTCAGTGAATATTGGAAGAATATTCCCGCCTTTTGAGTTTTGCTTGTGACAAATGACAAGCATTTGTAATGGTTGATGATCATTAATGGTCTTGAATCTGATATGAatcatatttcaaatgtttttaaattgatactGTATTCAGTCTACTATGACTTGCTTACATTAAAGGCTACCTTCTGTTTCAATTAAGTATTAATTGGCATATAAAAAACCTGAAACTATATAATCTGATGTAAAAAGCCAGCACACAGGGGAAAAGGATAATTCAATTCTGTATTGTGGCGATTGTTCCCTAAACCTCAAAAGGTGAACTCAAATTTCAACACTTCTCAGTGCTAATGCAGCAGGAGGATTTCTGGAGGGCTTGGAGAGTGTGGTAAAGGACACTACACTGTTCATTTCCCTCCTGTGGCTTCTCTGTGTTCCTCTGCAGTGCAGCTGTTATTGACAAAAGCATCTGGCTTTTTCAGTACTTGCTGCTTCTTTGTAACTGGCTGCAGAGTACAGCgaggacaaaaaataatttgagcCAATTAGGAAACGTTGCATCACAAAAGCTGCAGTCTCTCAGCGGCACTAAACAGGCTGTTGCTGGGCGTTTTGGGTCTCTCGCCTTGCTCAACTTGTGTATAGGTCATTCTGCCTTTATACTGTGTTATAGTTGTAACAAATCTCAAAACTGTATTCTGTCTCAGTTGTACATCTTTTCTATAACATTTTACGTGTAAAAACCCAAAGTATACATAATCTATATAAGgagaataatatatacatacatatatatccatataaataaacatgcagatTGTACAGAAGCTGAATGTCATGTTCTTCATTCTCAATCTCTCAGTGTATAATCAGTGCTGATACATGAAGATTTTCAAAAGGTTCTATTCATatgaaattcatttttatacAGAAGTATTCAGCTGCTATTTATGTTGCACTGTCAAAACAACATTCTGAGTAATAAAggctcttttgtttgtgttctaaACTTGGGTGTCTGGAGAAATTATTTAACCAGATGCAACAATTTTGAACATATGCATAGTGGTAAAACCAGCCAGCCTCAACACATTTGACTAGCCTGCTAAATacgtttatattaaaaatacaaatccatTGCTAACAATTTAATGAATTTCTTAAGAAAAGGACAATAGCACTGATATGTTACAGCCAGTGTACACTTTCATATGTATTCTGTATGCACATGTATACTGAGCTATGGCAGGATACAGTCTTTGAATTCCAGCTGGGTGTTCTGAGTATAATCTGTAGTTCCTTTCATGACAGTTTGACAGGCACGCTGGAAGACACTTAGTTATTTTCTACTTAATGTGCTGTTCACTTCACTTCAAAACCTCCCTGTACAGAATGCAAATAAGAACTTTCTTCATAATGAATGTGTGTGGTCAAATGTCCACACTCACCCGATGTATATGTTCTGTAGTATGTGCTGTATGTTGAGACTGAGGTGTTTTATAGCAGGTGAGGTTCTAATGATTTATTGAATAAGCTTGAACTCCTTCCTTATTTAAGTAGTTTATTGTAcaagttatttttcataaattacTTTGTCTGTAGTGTAGCATACGTTTATAATAATGGCAACCCCCCCACATTCCATTTTCTTCCAAGTTTAAGGATTATTTGATCTGTAAAGCTATTTTATACTTGTTATTATCAGATAGTATTTTAAATTCCACCGGAAATTGTTGATAATGATGATAACGTCCATAGTGCAAACCTATATCATTTTCGTTTATAGGAATTAATTGGAATTCCTTTTTACAATAGGGTTGTTTTACAGACATGTTTAACACATGGCCCTTCTAATCCAGCCATCTGCTTTACCAAAACCAATGGATTAATACAAAGTGATATTCAAATTGATGGCCTGgatataacattgtttttgtgtaagaaaaaaagtttgcacCACCTTCTTGAactggaataaaacaaatattaaaatgttaagcTAGGGAAAAGCATTTCAGTTGGAGATCCTAGATTCACTGTCAACACTGTTCAGTGTTGAAGTGCTGTTTGTTATAATGTTGACTGGATTAATTATATTATCAGTGAAGAAAGAtcatcttaaattaattaaaatccctTTATGTCCCTTTAGTCCTTTATGTTTAACAGCTGTCTTCAATCAATGTCTTAAGATCACACTAATATTGACTAAGAAAATAATTGCTTTCATTAAGTTATTGAAAAGCTTGGTTGTAATGAAAATCAGAAACCTCTGTGgctctccaagaccagggttTAAAGCACACGGTCTTTCACTTCTTGCAGGTACCAGTTTTGTATCAGAATGTATGACTATTGAACTGTAGGCAGTTTTTTTCAAAGTATATGGGCCCTAAATATACAATGAATAGATTATAACGATTCAGCATGTAATGTTCATTGGAATTTGCATGCAAAGAAAATGACTTATTCACATGCCTAAAATTACATAAGTTAAAATAGTTCTTGCTTTGCAGTGAATAGCCAAGGCTGGATATGTGATCCCATGACATGGGTATTAAATATGATTGTTTTCGCCTTGGTGCTTTTACCCCACTATCCTTATACTTTCCCGCTGTGTACCAGCATAGGGACTGTGCTTCTGACAGTATTAGTGTACAACACATCTGTGACAGGATTCCCTGTGTAAATattatgcaaaaaatattttgaatactttCATAAATGCTTTACAGTGTAACTGATGCCATGTATGAACAAGGAAGTaggattttaaatgcaaaaattgTATATGAAACATTCTATCTTACTTatgatatataattaatttccaacagtgttaaaaaaaagaaaaaagccaagCTGTATGAATCCTTGGTAAGGATTTTCTTAAGTACTGTATGCATTTCTATGTATGATGAATGtctgttaaaatatgtttacaacattaaaaaaaagtggcaacattat

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K08531 NR1D2; nuclear receptor subfamily 1 group D member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021683 True 6193 mRNA 0.41 9 25418820 25432607

Neighbor

gene id symbol gene type direction distance location
AMCG00021684 rpl15 coding upstream 3672 25412945 ~ 25415148 (+)
AMCG00021685 NA coding upstream 12718 25384796 ~ 25406102 (+)
AMCG00021678 kat2b,LOC106588888,LOC106570503 coding upstream 411090 24987477 ~ 25007730 (+)
AMCG00021672 plcl2,LOC106605271,LOC106582018,LOC107688208 coding upstream 896545 24514118 ~ 24522275 (+)
AMCG00021671 NA coding upstream 961458 24444307 ~ 24457362 (+)
AMCG00021688 NA coding downstream 159930 25592537 ~ 25615265 (+)
AMCG00021687 rarb,LOC107372434,LOC107700643,LOC107717720 coding downstream 199579 25632186 ~ 25678181 (+)
AMCG00021689 NA coding downstream 281977 25714584 ~ 25716586 (+)
AMCG00021694 LOC108441798,LOC107698647 coding downstream 370818 25803425 ~ 25832384 (+)
AMCG00021697 NA coding downstream 489595 25922202 ~ 25943386 (+)
G87525 NA non-coding upstream 1057911 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 1157203 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 1199996 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 1279312 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 1386703 24029844 ~ 24032117 (+)
G87704 NA non-coding downstream 96717 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 399847 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 452839 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 658569 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 1277610 26710217 ~ 26713476 (+)
AMCG00021682 NA other upstream 46481 25276776 ~ 25372339 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 469720 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1219993 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 1240728 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 2707676 22697164 ~ 22711144 (+)
AMCG00021692 NA other downstream 319750 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 411087 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 719461 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 1102486 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 2200308 27632915 ~ 27637084 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_03653954_03661389 NR1D2B coding CI01000320 null 3653954 ~ 3663242 (+)