AMCG00021686 (nkiras1,LOC106588667)


Basic Information

Item Value
gene id AMCG00021686
gene name nkiras1,LOC106588667
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25406702 ~ 25411562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021686
AGCAGTCAGTGGGTGTTTGTCTTTCTGTAGGAGCTGCACTGGACTATAACCTGGTGTCGTTATACGATCTGTACAGTCTTTCTGTTTCTTGAATGTTGCATTCAGTTTTATTGATCTATATATTACAAAACCCGAAGCAGGTTCGTTTATTCCTCGCATCATGGTTTTGTGATATTAACTTATTGTAGCCGAATTGCTTTCCGTTACGAGCCGCTGCGCCGGGCCGTGTGTCTGTGCGGGCTGTGAGCAGTGCAAGGTCGGGCGCACGGCATGGGCAAGGGCTGCAAAGTGGTGGTGTGCGGGCTGGCATCCGTGGGCAAGACTGCCATCCTGGAACAGCTGCTGTATGGGAATCATATTGTGGGGTCCGAGTCCAATGAAACCCTGGAGGACGTGTACGTGGCCTCGGTGGAGACGGACCGTGGAGTGAAGGAGCAGTTGCGCCTCTACGACACCAGGGGACTCCAGGACGGACTCGAGCTGCCCAAGCACTACTTCTCATTTGCAGACGGGTTCGTGCTGGTCTACAGCGTGGACAGCCTGGAGTCCTTCAAGAAGATCGAGGTCCTCAAGAAGGAGATCGACAAGTCCCGCGACAAGAAGGAGGTGGTGGTGATCGTCCTGGGGAACAAGACGGACCTCCACCGCAGGCAGGTGGACCTGGAGACGGCGCAGCAGTGGGCCCGCGTGGAGAAGGTGAAGCTGTGGGAGGTGAGCGTGACCGAGCGCACCACCCTCATCGAGCCCTTCACCGTGCTGACCAGCCGGCTCACCCAGCCCCAGAGCAAGTCCTCCTTCCCCCTGCCGGGCCGGAAGAGCAAGGGCACCCCCTCCAACGACATGTGAGCGGAGCCCCCGGGCCGGAGCGCTGGCTTCGAGCGCCGTGCCTGCAGGGCGTAGCGGGAACTGCATTGAACCGCAGCAATAAAGGGAACTGGAGGGAGACCGCGCTGTGAACGTGGGAGCACTGGTGAGCGAGCGACAGCACCTGGACGTTGCTGCAGCTCGTGTGATGAGCAGCTTTGAGTCAAAAGAAAAGATGCTTTTCAATCGCTCAGCAGGACAATTTCAGAAAATAGTTTGCTAAAATATGTAAACGCCTACTAAAAGTTCTTCCATAATCTAATTTCAGTAACTAATTTCAAAACTGTAGCGTTTCTCaagaattttatttttcaattatatcaGTTATAGAATACTGAAAACTGTCTTCATGCAATGcttagttaaaaacaaacaaatgcatataattGTCCATAAGATGTAGCAGAAACATTTTTGGCCTCGTCTTTGTGGATTTGTGCTAAAAACgtaatatttaattactttaaacattAATGTAAATTCTACACCTTCACAATGCTTAGATTTGAATTCTGCCTTTTCAAGAGTCATGCTCTGCAGAACCCAGTGAGAATCACTAACTCTGAGAAATGTAGcgtttttaacatttcagtgtttgttttgtgatgtgAGAACTGATCTTGCAGACTATATCCTCAGCAAAAGTAAAGATAGAAAAGCTGCAAGCAGTGCTTACAGGGGACACTTGGTTGTAATGGCACAATATAGCTGCAGGGCTCCAGAGTACACTGGGTATCAGGTTAATCACACAGCCCATTATCATTGTCCATTTTGAATGTCAATTTATATACAATCCAATGTGATTGATATTTTACTGTGAATGAGGAAGGTATTCACACAATATCCTGTTGCGCTACAGTCAAGATGCATATTAttggttttctgtgtttgttcttaATTTCATACACAACCACAGCACATTATATACAGTTAAACTACAACCAACTGTAGGTGGTTCTATGCAATggataattttagttttttttctaattatttaagACAACTTTTAAGTATAATACTTGAATGTTTcttgattgtttgattttttcCATTGCAGTTTGTAAGGTGTCagcattttacagatttatCATTTTAACCACTACGACAGATTACCTGTGTCTAAGGATCAGGGAGCAATAAATTagtgtaaatacatttcattaaagtattcacatccttcaaTTGAAACCATTATTCAGTCATTCGTTGTATGGAATTTTGTTCATAAAACTTCACGTATGTATCGTTCCAGGCCGTTGAACGCCAACTCGAAAGATTTCAGTGTATTGACAGGGTTAAGATGGGGCAGGTCAGCTTTTGACTACCGCTCAAttgatttccattttctttcccGACGATTAATGACCGCAGTCTCATATTCCAGGAAGTGCTCATTTATCCTTGCTATGTGTGGATAGACAGCCGTACTTTCATTTGTAAATCTGGGTCAGTGACTCCTACACTGCTTTCAAAGAGCACATTGCATTAGGTTTGGATATTTATACCTCACACTAGTTCATTGTGCCTTCTATGCCTCTTCTGCTAAAAACGAATTCTGATTAGATCCGTAGGTACTTTTGACTGGTCTTCCACACATTGATGCTGAAAACCTCCAAGGTCACAGAAGTAGTAGAATAAAAGATCAACACACTACACAGAACAGCATTATGCACTTTTATGTACGTTAAGTAATACTTTTTCAATATATGCACCAGTAGTTTCCTCTGGCAGTACGTGTTGTCTTGTTGAAGTATTTTTGTGCTTTGAGTCCTTTGTCAAACTTGCTCCGATTTTTCCCATGTCAAAAGCAGTGTATAGAGCACTTTATGCAATATGGACACTAAGGTAGTTTCACTTTatcaaatctaaattaaaaatgtcagattGTCCTATCCTGTATTGTGTcagtaataaaaatatgtactgaaatgttgcttttgtccattacctttgttttataacaATATGAAAATAGTGTTTAATAATTAATCCACA

Function

symbol description
nkiras1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm. Orthologous to human NKIRAS1 (NFKB inhibitor interacting Ras like 1).

NR:

description
PREDICTED: NF-kappa-B inhibitor-interacting Ras-like protein 1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021686 True 2859 mRNA 0.43 3 25406702 25411562

Neighbor

gene id symbol gene type direction distance location
AMCG00021681 NA coding downstream 202801 25202404 ~ 25203901 (-)
AMCG00021680 LOC104951919 coding downstream 321620 25074347 ~ 25085082 (-)
AMCG00021679 NA coding downstream 393942 25007690 ~ 25012760 (-)
AMCG00021677 NA coding downstream 419742 24975268 ~ 24986960 (-)
AMCG00021675 LOC107716986 coding downstream 604369 24766785 ~ 24802333 (-)
AMCG00021691 top2b,LOC106570304 coding upstream 271208 25682770 ~ 25704828 (-)
AMCG00021690 NA coding upstream 294014 25705576 ~ 25713766 (-)
AMCG00021696 NA coding upstream 307795 25719357 ~ 25799664 (-)
AMCG00021695 NA coding upstream 462329 25873891 ~ 25884232 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding upstream 551352 25962914 ~ 25976336 (-)
G87622 NA non-coding downstream 412460 24988401 ~ 24994242 (-)
G87627 NA non-coding downstream 416963 24987442 ~ 24989739 (-)
G87573 NA non-coding downstream 858579 24546082 ~ 24548123 (-)
G87495 NA non-coding downstream 1127315 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 1273391 24080736 ~ 24133311 (-)
G87694 rpl15 non-coding upstream 842 25412404 ~ 25460562 (-)
G87707 NA non-coding upstream 119911 25531473 ~ 25531759 (-)
G87717 NA non-coding upstream 245820 25657382 ~ 25657793 (-)
G87719 NA non-coding upstream 265421 25676983 ~ 25677417 (-)
G87720 NA non-coding upstream 266625 25678187 ~ 25681020 (-)
G87674 NA other downstream 164 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 1043243 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 1196497 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 1907941 23495025 ~ 23498761 (-)
G87263 NA other downstream 2068218 23338251 ~ 23338484 (-)
G87806 NA other upstream 493882 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 679665 26091227 ~ 26105391 (-)
G87871 NA other upstream 740543 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 1262516 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 1488401 26899963 ~ 26919844 (-)

Expression


Co-expression Network