AMCG00021699 (elmo1,LOC107710279,LOC107556397)


Basic Information

Item Value
gene id AMCG00021699
gene name elmo1,LOC107710279,LOC107556397
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25962914 ~ 25976336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021699
GTTATGCAGGTGGTGAAGGAGCAGATCATGAGAGCGTTGAACACAAAGCCTAATTCGCTGGACCAGTTTAAAAGTAAACTGCAGAACCTGAGTTACACCGAGATCCTGAAACTCCGCCAGTCTGAGAGGATGAACCAGGAGGACTTCCAGTCTCGGCCGATTGTGGAGCTGAGGGAAAAGATCCAGCCTGAGATCATGGAGCTGATCAAACAGCAGAGGCTGAACCGGCTCTGTGAAGGAACGTGCTTCAGGAAGATCAGCAGCCGGCGGCGACAAGACAAGTTCTGGTATTGCCGTCTGTCTCCGAATCATAAGGTCCTGCATTATGGAGACTTGGAGGAGAGCCCCCAGGGTGAAGTGCCCCATGATTCCCTGCAGGAAAAATTACCAGTGGCTGATATCAAAGCTGTTGTGACTGGAAAAGAGTGCCCCCACATGAAGGAAAAAGGAGCTCTCAAACAGAACAAGGAGGTTCTGGAACTTGCTTTCTCAGTCCTGTATGAGTCAGATGAATATCTCAATTTTATTGCTCCTGATAAGCATGAATACTGCGTGTGGACGGATGGCCTGAACGCTCTCTTGGGGAAGGAGATGGGCAGTGACCTCACCAAGAGTGACCTGGATACTCTGCTCAACATGGAGATGAAGCTCCGCCTCCTGGACCTCGAGAACATTCAGATTCCTGAGGCCCCGCCCCCAATTCCCAAAGAGCCTAGCAACTATGACTTTGTTTATGACTGCAACTAACAATGGACTTGACCAATTATTGCTTATTCGAACTGGAAAGAACTTGTGAgagaacacataaaaaaaactggATCTGTCTTTAACCCTTTCTTTCTTGCTATACTTGCTAAACTTACTTTTTTaaggtgtattttaatgtatttgcagCACTTAACTTGCCTGTGAGGCCTTCTGAACCGTATCATCATACCAACCACACCAGGGCTAGCAGAGGTCAGCCCTGGCCAAGccaagaaaaatgtacaaagtGTTCACCATACCAAACATCTCAACTCAATGCAGCAGTGAAGGATTATCCCAGAGGACTAGAATCACTTGTGttacagattgtattttttttctttttgttgtaaaatatttttttgaagcTTTCTGCTTTtcggttgttgttttttaaatatatactttaaatagaTGTGTATTGCCTAAGACTGTGGTTTGAAACTAcaggagaaaatgaaatgttgcacATTCTTACATGTGGCAGCTATGTATCCATGAAGAAAAGTGATTtacaggttgttgttttttattataaattgcCATAGATTTTATAGATTTATTGATATCTTATTCACGCTCCACAGAGACTGTTAATTCAAGTGCATGATCCTTAACTTAGCACTATCAAGCACAGAAACTGCCTCCGACatctaatttaataaaatctgcTTTGAGCTTAAAGGCACAAGTCCTGGTGCCAGTAGAATAATAATCCGTGCTTGTGACTTGTTAATTTTCTCTGTTTATTGTGTTCATTTATGTTGGCTGTTACATTCCAAAGCAACATTTGGCTTTTGTTGAGTAACTGGTGTAACCTTTTTTGTGATGTTTGTGAAGCTGCCAATTAGTCAGTATTATGTCATTGTTTCagtgttacaaaacaaataactcaAACtctgttacaaaaaataaataaatgcaaaatactggATGATGTTTTTAACCTCATCATCAattgaaagaaatgtacatttcatttgtaaaatatcaGTCATTCTGTTtatatgattttcttttgttaagCCATTGAAGTATCTTTCTAGGTAACAATTCCCTTAAATCTgctgtttacattaaaattcCATTTAATTAATCCTCACTCGCCTCTTGTGTACACTTGTTTCTGCATAGCCATGTTTGTTGcacatattacacattttcttctgcCATTTCTCTCCTCGCTCTATCAATTGAAGCAGCTGTGTATCATGGAGTATGGCTGCAACAGCATGATCggcagagttaaaaaaaaaaa

Function

symbol description
elmo1 Predicted to enable SH3 domain binding activity. Acts upstream of or within cilium assembly; lymphangiogenesis; and positive regulation of angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of guanyl-nucleotide exchange factor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including blood vessel; immature eye; mesoderm; nervous system; and pronephric tubule. Orthologous to human ELMO1 (engulfment and cell motility 1).

NR:

description
PREDICTED: engulfment and cell motility protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021699 True 2005 mRNA 0.40 6 25962914 25976336

Neighbor

gene id symbol gene type direction distance location
AMCG00021695 NA coding downstream 78682 25873891 ~ 25884232 (-)
AMCG00021696 NA coding downstream 163250 25719357 ~ 25799664 (-)
AMCG00021690 NA coding downstream 249148 25705576 ~ 25713766 (-)
AMCG00021691 top2b,LOC106570304 coding downstream 258086 25682770 ~ 25704828 (-)
AMCG00021686 nkiras1,LOC106588667 coding downstream 551352 25406702 ~ 25411562 (-)
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding upstream 49062 26025398 ~ 26056857 (-)
AMCG00021701 NA coding upstream 107442 26083778 ~ 26089986 (-)
AMCG00021710 NA coding upstream 464319 26440655 ~ 26472215 (-)
AMCG00021709 NA coding upstream 587870 26564206 ~ 26566938 (-)
AMCG00021716 NA coding upstream 667418 26643754 ~ 26656084 (-)
G87803 NA non-coding downstream 64873 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 76937 25885334 ~ 25885977 (-)
G87767 NA non-coding downstream 153710 25803340 ~ 25809204 (-)
G87756 NA non-coding downstream 193018 25769396 ~ 25769896 (-)
G87720 NA non-coding downstream 281894 25678187 ~ 25681020 (-)
G87882 NA non-coding upstream 418615 26394951 ~ 26395179 (-)
G87883 gabbr2 non-coding upstream 442344 26418680 ~ 26418899 (-)
G87884 NA non-coding upstream 455808 26432144 ~ 26437893 (-)
G87980 NA non-coding upstream 821755 26798091 ~ 26800715 (-)
G87992 NA non-coding upstream 916140 26892476 ~ 26895336 (-)
G87806 NA other downstream 54909 25905444 ~ 25908005 (-)
G87674 NA other downstream 556376 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 1599455 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 1752709 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 2464153 23495025 ~ 23498761 (-)
AMCG00021700 NA other upstream 114891 26091227 ~ 26105391 (-)
G87871 NA other upstream 175769 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 697742 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 923627 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 2805466 28781802 ~ 28783281 (-)

Expression


Co-expression Network