AMCG00021710


Basic Information

Item Value
gene id AMCG00021710
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26440655 ~ 26472215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021710
CAGAGGTAACGCACAGAAGACAAAGATGGCGGCTCCCACCATTGAAACATGTTACGTTTCTTGTTGTGCGAATCGTACCCCCAATGCACTTTCCTGGGGGAGAGGAGGACTTGTTGCGTTCGGTACATGCAACTCTGTGGCTCTGTATCATCCGCAGAAAAGAACCGTCATTGCCACTCTGAATGGACACACCGGTAGAGTGAACTCTGTGCAGTGGGTGCACAGACATGACTGTGCTCCAGAAACAGAACTGGTGTCTGGAGGGTCTGATAATCAAGTCCTTGTGTGGGAGGTCCAGGATGGGAAGTTTGTCAAGTCTGGACAGTGTTGTGGCCACACTGGAGCGGTCAGTGCATTGGATGCTATTTACCTGGGAACTGCAGATGCCCCTCAGTTACTCATTGCCTCGACTGCCTCTGACTCGACAGTTAAAATCTGGATGAAGCAAGGCTCGCACACACAGTGCCTGCAGACATTATGCTTTGGAAATGGATTCATGATGGATGTTTCGCTGACACTGTTACCTCACAGCAATGTGCCCGTCCTGGCATGTGGAGGCGATGACTGTCGGGTCCACTTGTTTATTCGACAGAACGGACAGTTCGAAAAGGTGTTCTCTCTGCTCGGGCATGAAGACTGGATCAGAGGAGTGGAGTGGGCTGTCAAGGatgGGGAAATGTTATTAGCGAGTTGCTCCCAGGACTGTCTGATAAGAATGTGGAAAGTGTTTGCAAAGTCAGACAACATTATGGCCGATCACGATGTGGAGACGATCAAAATGAAAGAGGACGTCATTGTGGTGAAATTGGAGGaTTCTTTCACATCCTATGCTGTTACCCTTGAGACAGTCCTGGCAGGCCATGAAAACTGGGTGTATGGGGTGCACTGGCAGCCTCCTTTCCTTAAAGATGGCATTGTCCAACAGCCCATGCGTCTGCTGTCTGCATCGATGGATAAAACTGTGATCCTGTGGGGTCCGGATGAGGAGTCCGGCGTGTGGCTGGAGCAGGTGCGTGTTGGAGAGGTAGGCGGGAACACTCTTGGGTTCTACGGGTGTCAGATGAGTCCGGACGGATCTATGTTTATGGCCAGTGCTTTTCATGGTGCCCTCCATCTCTGGTACCAGGATTCAAACAAGGAGGGAGAGTGGCGTCCAGGGGTTGTGGTTTCTGGCCACTTCAATAGTGTTCAGGATCTCAGCTGGGATCCCAATGGCGAGTTCGTTGTGAGCGTTGGGTCTGACCAAACTACTCGGCTCTACACTCCCTGGAGAAGGAAGAACCACACCGAGGTGACCTGGCATGAAATCTCCAGACCTCAGATCCATGGCTATGACATGCAGTGCCTGGCAATGGTGGGACGTTTCCAGTTTGTTTCTGGAGCAGATGAGAAGGTTCTCCGGGTTTTCCGGGCTCCGCGGAATTTTGTGGAAAACTTCAGCAACATCTCGGGGGTTTCCCTGGAAAAGATGCTGTCCTCTAGTGACAATATTGACCTCCCAGAAGGAGCCAGTACGCCTGCTTTGGGTCTGTCCAACAAGGCTGTCTTCCAGGGTGATCTAACCCCTCAGAGCCCAGATGAGACAGGCCAGTTCAGCAGTTTGTCTGACCAGTACACCGAGTCCTACTTCCATCCCCTCGTCCTCACAGAGCCCCCCCCAGAAGATCATCTCCTGCAGAACACACTGTGGCCTGAAGTACAGAAactGTATGGCCATGGCTATGAAATGTTCTGCTTGGCCTCCAATAATGCCAGGACAGTCATCGCTTCTGCATGCAAGGCCTCCAAGCCTGAACATGCAACCATCCTTCTCTGGAGTACCTCAAGCTGGAAACTACTGCTGCGTCTCCCTCTGCACAGCCTGACTGTCACTCAGATGGCCTTCTCGCCTGACGACCGGTTCCTATTGGCCGTCTCCAGGGACAGAACGTGGTCGCTTTGGCGACAGCAAGAGACGGCCGGCACTGATTCAGAGCCTTGTTTTACTCTCTGTGGGAACACCGATAAGAGGAACTCAGTGATCATATGGGGAGATTGCAGCTCGGCTGAAAATTTAGAAGAAAACAAGCCAATGGTCATTCGGCCCTGTTCGTCAGTGCTGGATGTTGGAGATGCAGCCACAGCTGTGACCTTTAGCCCTGTAAAttacattCTGGCCGTGGGTCTGGAGTGTGGGAGGATTGTTCTGTACAAATGGAGGCCAGAGACGGATCCATCTGCAGGAACAGACTGGGTTAAATCTGTAGAAATGGATGATTTCCAGTGCCACACCCTGTCAGTCAAGAGGCTGCGCTGGAGACCGAGGGCCGGCAGGACTGGCCATGCAGAGGACAGCGGGTGGATACAGCTGGCCAGTGCCGGCGCTGACCACTTTGTCAAAATTTTCAACATCAATAGACTGGCTCTTTAGGTCTCGGGGCGGGGGTGGCAGAGGGGGACTAGTGACTCTCTTGCATGTGATGGACAGCGCACAGATGCATCTTTGACTGAGGTGCATTTTCCCTGTCTGCACTCGGCACTCGGATGGGCTCCTGGACACCTTTATCGCCTTTCCAATTTCCACCGCTGCTTTCTTCGGTATTATCCTTgcctttaataataatgataaaacaacaactgttGCAGGAGCAAACAAGACAGTGAAAAGGATagcagttgttgttttatgaTCTCATTAttagtgaaaataaatagtgcTCACAGGTGCGCACAAATTTGATAGACCTGCGGGGAGATTACTAGCAGTGTCTATATTGGATTGTGTGTGTAGTATTACTGGATCCTCGACTCTCATTTAAGCTGCACCTTGATTGAGCCAAGTCTTAATACAGCAGATTTGTTAGGtttaaaagaaattaaacatgatctacagctgcagtgaATAAGTCCAGTCTATGGAAGGTGCGTATAAGCAAGACAAGCCTGGACTTTGAGTTAGGGGAGGGGATGAACCGGAGGATAAAGCTGCAGCTTGTGTAATAACAGAATCATGGGGGAGATTGCTTCTGCCCTAGAACAGTGAAAGAATGAAAACCTTTTGGCACCCAATGTATTCAGCAATTCCTTTAGCCAACGTGAGCTCTATTGAAAACCCGAAAGAAACCAGAAGCCTGCCTTATTTGTCTCTCTTTCCTCTGCCTCTTAAATTCTTGTTGTTTAGAAGATGCCAGAAGACTGACGGATACAGGCCTGGCGCTGCAAGTCACGGATTAAAGAATTCCTCGAAGTTATCAgggttatttaaaacaaatctcggAGTACTTTGGATGCGGATGCCTAATAACGGGATTTGCGGATTAAAGCTGCAGGTTGCCAGTGTGTTATTTGATATGACACTAAAAGTGAAAGAATCAAGGGCACTTCACTCTCCCTGCGACTGCGATCCTCGTGAGGGGAGTCATTTGCATGTGCTGAAGAGGGTGTCATGGTAGTTTAGTAGTGCATCAAGCTCACAGGCGAGCAAAGCTTTCATCATACAACATCTTGcatttattgtagtttttttatggttttgtttgtttttttaatttgaataaatccCCTTCTTTGGCGAATTGTGTAAAGGTGCCTTTCTTTTTAAGTACCCTGTTCTTATTTTGTGCGAAAACCAAAAGGCACAGGGATGCAGGCTTAATCATTGTTCCTCACTCCATCTCTATTTCTGCTGTGGTTTTATATTGGTtaagtttgattttaaaagttcatTTGAATGGCTTGGAACTACAAAAGGTAAGGATAAAAATGTGTTGGTACACTGCGGCTCATTAGCAAGGATTTGCCAACACTGCATTACTGTGCCAATTGGCATACTTTTAACCTCCAAAAGAAGCATGGTCCGGATGCTTTGTTTGTGCCATGCATAATGTAAGATTGCAAATGTGTTTGTCCTATATGAGTCCTGATAGGAG

Function

GO: NA

KEGG:

id description
K11374 ELP2; elongator complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021710 True 3908 mRNA 0.48 22 26440655 26472215

Neighbor

gene id symbol gene type direction distance location
AMCG00021701 NA coding downstream 350669 26083778 ~ 26089986 (-)
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding downstream 383798 26025398 ~ 26056857 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding downstream 464319 25962914 ~ 25976336 (-)
AMCG00021695 NA coding downstream 556423 25873891 ~ 25884232 (-)
AMCG00021696 NA coding downstream 640991 25719357 ~ 25799664 (-)
AMCG00021709 NA coding upstream 91991 26564206 ~ 26566938 (-)
AMCG00021716 NA coding upstream 171539 26643754 ~ 26656084 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding upstream 332825 26805040 ~ 26824298 (-)
AMCG00021725 NA coding upstream 473957 26946172 ~ 26946690 (-)
AMCG00021731 brp16,LOC107589436 coding upstream 532266 27004481 ~ 27009904 (-)
G87884 NA non-coding downstream 2762 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 21756 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 45476 26394951 ~ 26395179 (-)
G87803 NA non-coding downstream 542614 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 554678 25885334 ~ 25885977 (-)
G87980 NA non-coding upstream 325876 26798091 ~ 26800715 (-)
G87992 NA non-coding upstream 420261 26892476 ~ 26895336 (-)
G88095 NA non-coding upstream 937208 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 1147605 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 1154905 27627120 ~ 27631668 (-)
G87871 NA other downstream 286280 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 335264 26091227 ~ 26105391 (-)
G87806 NA other downstream 532650 25905444 ~ 25908005 (-)
G87674 NA other downstream 1034117 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 2077196 24342900 ~ 24363459 (-)
AMCG00021719 ndrg1a other upstream 201863 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 427748 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 2309587 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2596986 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 3257862 29730077 ~ 29742808 (-)

Expression


Co-expression Network