AMCG00021711


Basic Information

Item Value
gene id AMCG00021711
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26661019 ~ 26680085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021711
caGGGTGGTTCAGCACTTTCACCAGCCACTGTTGTTAGTCACACGAAAGCCAATGAGCAAAGCAAAGCTCTTGCCAATGAAGTGGGTTGCCCCTCTGTCGATCCTGAACAGCTCATAACCTGCCTGCGTGAGACACCAGCCCTGACTCTCAATACAGCTCAGACTAAActGCTGGCTGTCAGCGGGCCATTCCAGGCATGGGCCCCAGTTGTGGATGGGATATCTGTCCAAGAATCTCCCTTTTCAGCCTTCCAAGGATCACGATTCCACCATGCTGACTTAATGGTTGGCTCTTCAGCGGAAGATGGTCTGATCAGCAGGGCAAAAAATATTAAGAAATTTGAAGAACTACAAGGGAGAGCCAACAGCAAAACAACCTTCTATGAAGCTTTATCAAACTCTCTGGGTGGAGACGACAGCAATTCATTTGTCAAAGATGCAGCCACATGGTTTTATTCCCTGCaacactctccctctcctgtaGGCTACAATGTGTTTTCACGGGCTTTGGAAAATGCTACACGaGATCTCTTCATCATATGTCCTGTTTTGAGGATGGCCAGTTTCTGGGCTGCCAACACCAGATCCAATGTTTTCATGTATCATGTGCCGGAGAATACAGCTCAAAACAGtcttGATCTAGGTGTCCCTCTGGATGTTCAGCTTGTATTTGGATATCCTCACCAATACAGCACTCGCCAGCTGTtcactcagagagagagaagccttTCCCTACAGATTATGCACTATATGGTGAATTTTATTAAGTCAGGAAACCCCAACCACCCATACTCCTTCTCAAGACTGTCCCTCAGCGAGACTTTGCCACCCTGGTCTCGGTTTCTGGCACACCCTACTGGAGATAACTACAAGGAATTTGGCGTGTCCCTTCAGAATCGCAAGGAGCTGAGGAAAAGCGAATGCTCTTTCTGGTCTGACTACATTCAGACTTTGACCGCGTCCACAAACAAACTTTCGAGGGGCATTTCAGAAGAAGATGACACAGTGGCCACGCCAACAGATGGAACAAAACTATTTGGTGTTTTCCATACTTCAGTAACTGAGAGTAAACCAAAATCTGAAAAAGATGCTTATAACTAGATCATAATGAATATGTTAGCAAGTTCCCaaattttcatttcagttaagATCTTGCTGAATAATACCAACTTTCTATCTTGTTCACTGATCTTACCCAATGAATCTCAATCACATTACTGAGCAATGCGTTCACTTCTGGCTTtgtgtaaattaatc

Function

GO:

id name namespace
GO:0007416 synapse assembly biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021711 True 1257 mRNA 0.45 7 26661019 26680085

Neighbor

gene id symbol gene type direction distance location
AMCG00021715 NA coding upstream 17698 26640291 ~ 26643321 (+)
AMCG00021713 NA coding upstream 20914 26597621 ~ 26640105 (+)
AMCG00021712 phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800 coding upstream 64669 26579325 ~ 26596350 (+)
AMCG00021714 NA coding upstream 84322 26575405 ~ 26576697 (+)
AMCG00021708 NA coding upstream 127612 26525270 ~ 26533407 (+)
AMCG00021717 NA coding downstream 7015 26687100 ~ 26700241 (+)
AMCG00021718 NA coding downstream 70346 26750431 ~ 26751588 (+)
AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding downstream 104034 26784119 ~ 26802985 (+)
AMCG00021721 NA coding downstream 156755 26836840 ~ 26844877 (+)
AMCG00021722 NA coding downstream 169793 26849878 ~ 26865877 (+)
G87824 NA non-coding upstream 566823 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 775316 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 828031 25832454 ~ 25832988 (+)
G87704 NA non-coding upstream 1131434 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 2300110 24359504 ~ 24360909 (+)
G87939 NA non-coding downstream 30132 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 40824 26720909 ~ 26737883 (+)
G87961 NA non-coding downstream 128172 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 132945 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 216640 26896725 ~ 26906365 (+)
AMCG00021707 NA other upstream 91871 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 463943 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 790824 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 907766 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1288680 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 952830 27632915 ~ 27637084 (+)
G88238 NA other downstream 2098230 28778315 ~ 28778733 (+)
G88276 NA other downstream 2380802 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2584742 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2698490 29378575 ~ 29385325 (+)

Expression


Co-expression Network