AMCG00021716


Basic Information

Item Value
gene id AMCG00021716
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26643754 ~ 26656084 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021716
GCGACAACTTAACAACATTAAACACGGAACAGTATAGCTTTAATTAGTCATGAAGCTGCGCTGGTCACAGTCCTTACGGTCTCTAGATGGACAGGAAACCAGTTTATAAATGACATATAATCCAGAACAAACTGGTAAATTCTGATGTAACTGGAAAAACACCTGAATGAGCACTTTATAAGtagAGCACTTGCACCTGATGCAACAACATACTAATTCAACATGGGGAATGTAATGAGGACCCAAGCTCCTGAAACTGAGAACGAAAATAGGACACTCTTCACAGACCCAAGACTGAAAGTGGTGGAAAATGACACACTTGTCGTGCTTCAAGATTACCCCTCTCCGGATATCAGTGAGCCCATCTTCAGGATAGGGGAGAAGCTGCGAGTTCTGTCTGAagAAGGCTGCTGGTGGAAAGTTATTTCTGTTGTCACAggaaatgaaaattacattCCAAATAACCATGTAGCAAAAGTCTACCATGGCTGGTTATTTGAAGGAGTAGTGAGACACAAAGCTGAAGAACTACTGAAGCTTTCAGAAAACAGAGTTGGCTCATTCATGATACGAGAAAGCACAACCGAAAGAGGTGTGTACTCCCTTTCAGTCAGGCACAGAACTATAAAGCATTATCGAATATTTCGCTTACCCAACAACTGGTACTACATCTCTCGTCGCCTCACTTTCCAATGCCTAGAAGACCTAGTAAACCACTACTCTGAAATGGCCGATGGCCTGTGCTGTGTCCTCACCAGTCCGTGCCTCACGTACAGCAATAACAACCTCAACCTGACAAACCAGCCTCCCCCAGTAGTGATGAGACGCAACAAGTTTGACTGGACCAATGTTGAAAGATCAGATATAATAAACCAGGGTGCACaaagtcaccaagaaaacaaagactCTTTAATAAGCTTTGGGGTGCGGAACAGCCTCCTATCCTACCTGTCCCTCACGGGCTCCACAGGAAATACTTCATACAAGAAAAGCCGAAAGAAAAAGAGCAAATCTGTTTACGCGGTCACAGTCCCCAGCACTGATCCCGAAGACTTGCCTATTGACGAGGAATACTATGAACCACAAATATAACATCTACTTTTAACTTGTTTTACAGTAAGGTGGTTTTGCGAAATAatgttctattatttttttgtacatataATTAATAGCCAAGTGGAATCAGCTAAATCCTGCTCCCATTGaacatatttcaataaattatattcataGATATATCACATTATCACAGTATTATTCTTTAACCTCAAACAAGTAATGAATGATAggtgtattttatatgatttattatttgaatctcCCTAGCCTGTGAACACAGCACTCCCAAGCACTACGACTTATTTTTATCTTGTATGGAGAACATCCTCAGAGAAATTCAATCTAATTTATTTGtcctatatttaaattataaacaaaaagtaTTATACCTGTAAGACATATTGATCATGATGCACTGCAAATATATCtaaaggtttctttttttacactTGTGCATTTTGTAACTTCTTTAAAATCATACTAtgaacaacaacataaaatgatgtataaaataagcaaaaccaCATAAGCAAGATGTATTAGAATCACTCATTAAATATTATTCGTGTGGATTTAAGATCAATGACATGGGTGGGACATTTCCTAGCCTGTTTAAAGGTGGCACTCAGAATGATGTGGCACATGGGGAGCTACGGGACCCGGATTTTTGTTGCTGCAATAGTCAGTCCCAATGAATGATGCTCATTCTTGAGCGAAGTGGAACAATTTAACCTGCTGGTGACCTCCTTATAGCTAGGAGGTGAAAATCAGCTAAGACTTAAGGGTTCACGGAGAAAAGGTGGCAGTGGGCAAACCACAGATCATCACTTATGATCCCTGGAATAGGCAAACACTCTGATGAAATGAAAGTGGCTTTGTGGACCGAAAAGAAAAATCTCAAACTCTAAACTCCTCCTACATTGTCATAGTTACAGAGCAAAGAGCTACCTTCAGTGTCAGCACAACAGCCATTTCATCTAGTCTGATTGGAAATGAAACATGTTATGCTACCTGCAACTTGCAAAGGGAACTGTTTAAGAAAATGAGCTGGTTCAAACTACTTTTTCTGTTTGCAAATCTTTAGCTTTATCTGTTATGTGTTAAAATGATACAAAAGCTGTTATATTATGTAGCATGGGCTCCTATGGTATGAGTCTATGTAGTTCTTTGAATACCTGATGTATCAATGCATTAGCTTTGTGAAGCTTAATGGCTTGATTGTTTTTGTAAGGTTAGTAGTAATGTATCAGAATCAGAAAGAGAAACTGTAGGATACTGAAAACCAGAAATGAATGACAGCCACTTTTCATgttctaaataaaatgtaataaaaaaaaatgtttgctggT

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021716 True 2408 mRNA 0.38 8 26643754 26656084

Neighbor

gene id symbol gene type direction distance location
AMCG00021709 NA coding downstream 76816 26564206 ~ 26566938 (-)
AMCG00021710 NA coding downstream 171539 26440655 ~ 26472215 (-)
AMCG00021701 NA coding downstream 553768 26083778 ~ 26089986 (-)
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding downstream 586897 26025398 ~ 26056857 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding downstream 667418 25962914 ~ 25976336 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding upstream 148956 26805040 ~ 26824298 (-)
AMCG00021725 NA coding upstream 290088 26946172 ~ 26946690 (-)
AMCG00021731 brp16,LOC107589436 coding upstream 348397 27004481 ~ 27009904 (-)
AMCG00021732 NA coding upstream 397959 27054043 ~ 27064071 (-)
AMCG00021736 NA coding upstream 540008 27196092 ~ 27202305 (-)
G87884 NA non-coding downstream 205861 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 224855 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 248575 26394951 ~ 26395179 (-)
G87803 NA non-coding downstream 745713 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 757777 25885334 ~ 25885977 (-)
G87980 NA non-coding upstream 142007 26798091 ~ 26800715 (-)
G87992 NA non-coding upstream 236392 26892476 ~ 26895336 (-)
G88095 NA non-coding upstream 753339 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 963736 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 971036 27627120 ~ 27631668 (-)
G87871 NA other downstream 489379 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 538363 26091227 ~ 26105391 (-)
G87806 NA other downstream 735749 25905444 ~ 25908005 (-)
G87674 NA other downstream 1237216 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 2280295 24342900 ~ 24363459 (-)
AMCG00021719 ndrg1a other upstream 17994 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 243879 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 2125718 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2413117 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 3073993 29730077 ~ 29742808 (-)

Expression


Co-expression Network