AMCG00021718


Basic Information

Item Value
gene id AMCG00021718
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26750431 ~ 26751588 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021718
ATGCAGAACATCACCGAAGTGTCCAGATGTGCTCCATACGGTCCCCACTGTATCACTGCTGCTAGGCTCAATCAGCCGACGAGGAAATACAAGCGATATCACAAAACTCACAGTACTTATCTGGGACTGATCGCCTATGTCATCCAAACGTCTCCAACGAAAAGCCTCATGTTTTGTCAGATAATGGCCAAACTGCAAGCGTTCGTCTCAGGAGAGAAGAAGGGACTGGAAAACAATGTGCGGGTTTGTCTGTCATCCAATGACTGCTTTGTAAAGGTCCTGTCCAACCCGGACAATCCCAATGGAAAGAGGAACTACTGGAGAGTGGATGAGACCCGCATCACCCCGAGGTTACTGCAGCGCCATTTCAAGGGCATGCGGCACATCTTCCCCGGTTTGGCTTCGAGGGACAACATGGAGGCTGCTGGCGGCATCCGGAAGGTGAAGTTCAGCAGCTCATTCTCTATCGACTCTCTGCTGAAGAAGGACAGTGCCCCCCAGGCCTTAGAGAAAAGCAGCGCCCCGTCCAGCAGCGCTGAGGCGGAACAGTCCGGGAGGAAGAGGCGCCGGGGAGAGCCGGGCCTCACTGGGATCCGCGATGCCGAGCCAGGCCGTGTGAATGATGAGCCAGAGCCAACCTTTGTGCTCTCCATGGCTgggcagagagaggggatgATGGCCAGAGATTGTCACATCATGTACCCAGAACAGGGCTCGGGAGAAGAGCCCAGGCCTGCTAAAACAATGCGCCTCTACACTCACCTGTCCGCGCCCGTCCCTCCAGCCCCGCACCTCGCCTACCAGCTCAGCCGCACCGTCAGCAGGAGCTTCGGAGCGGCCTGGAGCCACCAGCTCTGTTATTACCCGGGAAGCGTGTACTCTCTGGAGCCTCAGTACTTTTcctcattttga

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021718 True 912 mRNA 0.56 3 26750431 26751588

Neighbor

gene id symbol gene type direction distance location
AMCG00021717 NA coding upstream 50190 26687100 ~ 26700241 (+)
AMCG00021711 NA coding upstream 70346 26661019 ~ 26680085 (+)
AMCG00021715 NA coding upstream 107110 26640291 ~ 26643321 (+)
AMCG00021713 NA coding upstream 110326 26597621 ~ 26640105 (+)
AMCG00021712 phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800 coding upstream 154081 26579325 ~ 26596350 (+)
AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding downstream 32531 26784119 ~ 26802985 (+)
AMCG00021721 NA coding downstream 85252 26836840 ~ 26844877 (+)
AMCG00021722 NA coding downstream 98290 26849878 ~ 26865877 (+)
AMCG00021726 bop1,LOC107693294,LOC107753474,LOC107669991 coding downstream 202569 26954157 ~ 26978899 (+)
AMCG00021729 NA coding downstream 249529 27001117 ~ 27002570 (+)
G87942 NA non-coding upstream 12548 26720909 ~ 26737883 (+)
G87939 NA non-coding upstream 36955 26710217 ~ 26713476 (+)
G87824 NA non-coding upstream 656235 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 864728 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 917443 25832454 ~ 25832988 (+)
G87961 NA non-coding downstream 56669 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 61442 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 145137 26896725 ~ 26906365 (+)
G88024 NA non-coding downstream 305786 27057374 ~ 27057611 (+)
G88025 NA non-coding downstream 308594 27060182 ~ 27060389 (+)
AMCG00021707 NA other upstream 181283 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 553355 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 880236 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 997178 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1378092 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 881327 27632915 ~ 27637084 (+)
G88238 NA other downstream 2026727 28778315 ~ 28778733 (+)
G88276 NA other downstream 2309299 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2513239 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2626987 29378575 ~ 29385325 (+)

Expression


Co-expression Network