AMCG00021722


Basic Information

Item Value
gene id AMCG00021722
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26849878 ~ 26865877 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021722
GAAGAATAGTGCACTCTACAATAAAGTAACAAATCGGATGACACATTTACTTGTGTTGGGGGTGTATTAGGATGCTCGtggcacaaaacacaaaaaccttCTCAGAACGCACAAAAGGTAACAGGTCACACCCTTAACCCTGTTTTAATTAACGTAACCTTAGAAGAGTTTTTGCTGCGCCTGGATCCTGTCGCACAAGCACTGCCCCTTCTCAGCTCTGGGAGTAGTACAGCTATAAAACCTGTTGGTATCTATCCAGTAAAGCCTTAGACGTAAagaagacacacaaacacaaaaaagctcCTGTGCATTGCCTGGCCTTGGTTTCTAAAACATCCTTACAAAATGCAATCCCGAACTCTCTTTTTGGTCTCGGCTCTCATGACTGTTGGGTTTTCTGCACCCATCGATGaTGGAACACCTCTTGATGGGGCTAGTGACAGAAATGATTCCTCTGAACTGGTCCTAGATGTTGATAGAGATGGGGCAGATAAAGGAGATAAGGAAGACAAGGGAAAATCAGATGAAGACAGCAAAGatacTGATGAAAACAGTAATTCAAAAGATgctgaaaaagaagaaaaagactCGGAAAATGATTCAAAAGATGAGGACATGGCAAAAACAGATGCTTTAGAGAGCGCTTCTCAGGatgaaaCTCTAAAGACTTTGGACTTGGATTCCAAGGAGAGTGTTCATGAAGCAGACTCGGAGTCCGAACCAGATGCAGCAGAAGATAAGAGCTCTATGGAATCGCCTTTAGTCGacTCTGCAAGTGACAGTGCCAGCACAGAAAAACTTGATGTCCCAGATGACAAATCTTCAGAATCAGAGCTGAAAACCAACGGTTCTgacactgccagccaggaagAGACTGAGGTGGGAGCAGATTCTCTGAGTGAAGATCCAGGAAGCCACGAAGCAGACTCTGCCGACACCACTGATGACCAGCCAGGGCAATTGGATCACCCAGACCAAAGCACAGAGTCCACTGTTCAAGtTGCTGATGGTGACAGCAGCCTCTCAATTCAACAATCCTAGCAGTTCATTAGACGACTGCAACATTCTGTGGATTCCTGTGGATCTAGAGAAGGATGCTGACGCtcacataaaatgcaaaaaagatCCTGACATATTCTAACCTTCAAgcgaagaagaaaaaacaatattcttcAGTCCTTAATTTCCCCAATTTGAAGAGCTGAAAGGGTTTTTAATGAAATCACAAAGCAAACTTAAATTATTGTACTACTGATGCGCATTTCCTTTATTCATATTAacaatgtgctgtttttctatTGGCAGTTAACATTGTTCAAAGGGTTACATTCACTCCTACGCCACTTAATTTCAAGTATTCTAGAAGCAGTCTGCTGCTGAAACACATTGGCAATATTGTAAATCAACAGAAtaaatgctaataaataaatgaataaatactgaCTTTCCAACTGAAACTACATGTGGCATGTGGCAGGACATACAACATAAAAGGTTTGAGGAAGAGTCTTACTTTCTATGTTCAATACATAGTAAGTTAATTACAAGTTGAAATTCATACGTGCATACTAGTCCAATTATGTCAGTGTTCACTGGATATATGTTTCTGTCATGTCtgaactgaatattattttaaaaaaaatttgattttatttttctaaatctttttattttcatcaacaATGAAGCCCCCCTTATTGATATAAAACTGACTGCTGCATTgatactgtaatactgtactgttttattcaataacacatttgtttatactGTAATTGAACACGTTTTTATGCATGTACGCAGTGCACATAACATTGACAAGCTAAATATTGATGACCAGTTTtactaaacaattttttttttttcatttctgttttctgtcactGTCAAGTACAACAAAtgaatgcaacatttaaatattaaaacagtggTTATATAAATAGACATCATACAatgagtaaatgttttttttaactaaaaatgtgtttaataaaattcAGACAATATATGACAATATATGTGTATCTGTCTTTctgcatgaaagaaaaaacatgattaaaatattcatatttgtcaAGTATAGTGGGATAAACATAGTGCTAAAATGCTTTATGGCACATAGAGTTGCCAGAGACCTGATCTTGACCAGCAAATGATACTTAATGTGTATTAAATGGATGAGGTTTGTGACTGTTATTCTGTATAATTCATaactatgtaaataaatacaatttacccACTACACAATGTATACTTT

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021722 True 2257 mRNA 0.37 17 26849878 26865877

Neighbor

gene id symbol gene type direction distance location
AMCG00021721 NA coding upstream 5001 26836840 ~ 26844877 (+)
AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding upstream 46893 26784119 ~ 26802985 (+)
AMCG00021718 NA coding upstream 98290 26750431 ~ 26751588 (+)
AMCG00021717 NA coding upstream 149637 26687100 ~ 26700241 (+)
AMCG00021711 NA coding upstream 169793 26661019 ~ 26680085 (+)
AMCG00021726 bop1,LOC107693294,LOC107753474,LOC107669991 coding downstream 88280 26954157 ~ 26978899 (+)
AMCG00021729 NA coding downstream 135240 27001117 ~ 27002570 (+)
AMCG00021730 NA coding downstream 144992 27010869 ~ 27011910 (+)
AMCG00021728 LOC102788509,LOC106570431,LOC106588958 coding downstream 146045 27011922 ~ 27024907 (+)
AMCG00021727 NA coding downstream 160270 27026147 ~ 27054066 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding upstream 32596 26813030 ~ 26817282 (+)
G87961 NA non-coding upstream 39011 26808257 ~ 26810867 (+)
G87942 NA non-coding upstream 111995 26720909 ~ 26737883 (+)
G87939 NA non-coding upstream 136402 26710217 ~ 26713476 (+)
G87824 NA non-coding upstream 755682 26091176 ~ 26094196 (+)
G87993 NA non-coding downstream 30848 26896725 ~ 26906365 (+)
G88024 NA non-coding downstream 191497 27057374 ~ 27057611 (+)
G88025 NA non-coding downstream 194305 27060182 ~ 27060389 (+)
G88026 NA non-coding downstream 195942 27061819 ~ 27062090 (+)
G88027 NA non-coding downstream 197686 27063563 ~ 27063951 (+)
AMCG00021707 NA other upstream 280730 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 652802 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 979683 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1096625 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1477539 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 767038 27632915 ~ 27637084 (+)
G88238 NA other downstream 1912438 28778315 ~ 28778733 (+)
G88276 NA other downstream 2195010 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2398950 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2512698 29378575 ~ 29385325 (+)

Expression


Co-expression Network