AMCG00021723 (hsf1)


Basic Information

Item Value
gene id AMCG00021723
gene name hsf1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26899963 ~ 26919844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021723
ATGGCGACAACCATGCTCCTGTGGAATGTATCGTCTCTACGCAGTTCGTAAAAATGTCGTTTTGGTGATATAATCAATATCAAATATTTCGATAGGACAAAGTCAGTACATTGATATATATACCAGTAAATGAGTTGAACGTGAAGAGGAGGAATTAAACGGCCTAATATTAATGCAGCATCTCCCAAAGGCTGCGACGTAGTTTTTAACTTCTGTGCTCCCAGTttggttgtgtttgttgttgtttttccctgtCTTGGTTGCCATCACTTTTTTAACATTGATGGACATGGAGTTTCATGGCGGTGGTGGTGCCGGTGGGGTCTTGGTCAGTGGCAGTAATGTCCCGGCCTTCCTCACGAAACTTTGGACTTTGGTGGAAGATCCAGACACCGACTCGCTTATTTGTTGGAGTCCGggTGGTACCAGCTTTCATGTGTTTGACCAAGGAAGATTTTCCAAAGAGGTGCTGCCCAAATACTTCAAACATAACAACATGGCTAGCTTTGTCCGCCAACTCAATATGTatggGTTCCGCAAAGTTGTTCACATTGAACAGGGTGGTTTAGTGAAGCCAGAGAAAGATGATACTGAATTCCAGCATCCATATTTCGTCCGAGGTCAGGAGCAGTTGCTGGAGAATATTAAAAGGAAGGTTTCAAATATTAAACACGAGGATCTGAAGCTACGCCAAGATGATATCAGTAAGTTATTGACTGATGTACAGTTTATGAGGGGGAAGCAGGAAACAATGGATTCCAAGCTCATCGCCATGAAGCATGAGAATGAAGCTTTGTGGAGGGAGGTGGCAAGTCTGAGACAGAAGCATGTCCAGCAACAGAAAGTCGTGAATAAGCTCATTCAGTTCTTAATCTCACTGGTGCAATCTAACAGAGTTCTgggaatgaaaaggaaaatgcaaTTTGCCATGTTTGATGTCCATATTAATTGTAGCTTTCTCCTTCACTGTAGTCCTTTGATGCTGAACGACAGCAGCTCCGCACATTCCATGCCCAAGTTCTCTCGACAGTATTCCCTCGAACACCTACAGGGGTCTCCTGCATTCACAGCCTCTACCCAGCCGTACACAGGAACAAACCTTTACTCTCCAGACTCCCCTGTCCAATCTGGTCCAATCATTTCTGATGTCACTGATCTGGCACAATCGAGTCCCTCCGATACTACAGAGGAGTGGAAAGAAGGAAGGACAAGTCCATTAGTTCATATAAAGGAAGAACCCGCAAGTCCGGCTCACAGTCCAGAAGTGGAGGAGGTCAGCCCCGCCTCTGTGGCTGCAGATACCCCTCTGTCCCCCACCACCTTTATCGACTCCATACTGCAGGACAGCGAAGCCAGCACAGCTCAGCCCCGGCCAGAGGAGAAGTGTCTCAGCTTGGCCTGCTTAGATAAGCATGAGCTAAATGACCATGTTGAAAACATTGACACCAATTTGGAAAACCTACAGACAATCTTAAATGGGCAGTCCATCAACTTTGATTCTTCCCCACTTTTTGATTTCTTCAACTCGACTCTGTCAAGTACCGATTTTAACCTGCCAGATTTGGACACCAGCCTTGCAAGTatcCAAGAATTGCTAACACAAGACCAGAAGGCCACAGAAACGACTGGAAACTCCTCTGATGCAGGGAAACAGTTGGTTCAGTACACATCCCAGCCTGTGGTTCTAGTCGACTCCAGCAATCCTGAAAGTGCGAGTGGGGATCTTCCTAATCTCTTTGAGCTGGAGGACGACTCTTACTTCGGGACTGAAGAAGACGCAGAGGATCCCACCATCTCCCTCCTTTCAAACGAGTACCAACAAAAATCAGAGGACCCCGCTCTatcttaaatgttatttttataaaggGATACGCAacctgtattttgtgtttgttggtttttcttCAGCAGACTGTTTGGAGGCTTTATTATAGATGCAGTGAGGCCAGCGCCTCCTGTCAATATCTGAGACAGGATGTCTGATCATCGCAAGTTAAGACATTACTAGTATATCGGCAGTTTCATCTCACTACACACTTGCTCTCTGCTGTTTCTCCATGCTCGAGTAATATTACATAGAAGTTGTTCATTACTCTAGCTTAAAGTTTACCTATAAACATTTAATCATCCATAAGGTATTGTGGTTTGAAACAACGTGTCATCTATCTGACCACAGAATTCAAAAATTCCTTAAAGGATGAAATTCATGTAAAATTGCAATATGTTCTGTTTGGATATTCTAGGAAGTTGCTGATTTTCACAAACGGCTGACAGTATAAAGGaataaatcacagcagcacGTCTTACTGTTCTACTGTTTTTGGACTCGTGTCCTTCCGATGTCAACGGTTACATGAAACACTGCCTTGTACTTGTATATCTTACCTGCTCTTTTTCTCCAATACTCTTTATAGAGAGGAAAACCACGACAAAGAAAGTTCTCAAAGAATGCATTTCGGTTACCACCATGTGTGATATGTAGGTATAAATCTGTGCTTACTAATGactctggaaaataaatgttcttagATTGCGTAGCTATGTTTTAATGCATCATTTTATTACCCAGTTGCAGTTTAAGAACCCTGATTCAGATATTTGTTTGAAGTCATCTGATGTAATTTGTTGTGAATTACATAAAACCCAAACTAACAGTTCTCCCAAAACCAAACCTGACCGAAGGTAAAACAGTTTGTAGTGTCAtaagtttgatttgtttgtttgtttgtttctaacaCTGCCTTTTATAGTATAGCCTCATTTGCTACCGTTTTGTACATAGATGAAAGAATTGTGTATTGCTAATTTTACATCAGTGTAaatatgtatagtatatatgcatacattcacaaactgcaaaaataagTTATGGGACTAGTTTAGTCTTCTGGTGGTTTTATTGTACTACGTAggaggtttgtttgttttaaaccatCTACACACAGAACAAGGATATTTTGTAAGTAGGATCTTGAAAACAAGGGAGGCACGGGAGAGAATATTTCACTCTTAGTCATTTCTCAGTGTATACTGTCtcaatattatttgaataatagGGATGCTTACCTGGGGGGGAGCAGATCAGCTTCATCCCATCTCATTGCTATTAAACTGTGTCTGCTCAGTGTTGATAAATAAGctctgattttttatttttattttctttctccccaAAATGTCATTGTTCCTGACTTGTATTATCATGGCATTGTAATGAGTCGCTTTCTTAACATTTATACATAGCAAAGAAACTATTTATTAGGTTTTATTTGTCCAGGGGCAAAATTGAATTACCCAACAGTCATTCAAAAACTGGTCCCACACAGACATCTTCATCTTTAGCAAACTTGTGTTGTGCACAGCGCTTGGCTCTGATATTGTGCTatgtagattatttttaaatgagaataaaGTTTCTTGTTATTGGTTTGAGGTTTAAAGTTTTGGTTTCTATAATCTAAATTTACTGTACTCCTGCGGtttatcattttcaaatgttatttgtatatttacatttaaaatgttaatagtgaatttgtattttaaatttttacataaaatacccACTTAATATATTTATCGATTTCTGTAGttcagaagttttatttttgtaatctgCTTTACttttgagctctcttatggttATGTGTTTGGAACTTGTTTTTAAGTACAATTTCACTTTGAGAGAAAGTGCCACATTACATTGAATAATTACAAACCCATCGCTTGAAgtgtttcacacattttttgaTTGTTCGGTTCATTCTatttgaaggcttttttttttttttttattcaatgccCAGTTTCCACTGCTGCCAATTTCCAGGTGTAACAAAGCTCACTACAGGGTATAGTTCTAGgacttttctatttttgtttgacTATAACACATTTCCAGCTACACATTATAAATTCACATAGCCAGCCAGGGCAGGCAGCTCTGCACAAGAGAGACTCCCTCTCCTTGTTAAACGTAGATTCATATGACAAGCGattacaagacaaaaaaaagtagacaattatttgcaaaatacaaattaattaatcccTTAGTAAAGTATGAGAcgtttgttgttatttttttatgcatgtGATTGCGTAAATTGGAGGGGAAAGAAATGCTATTTACAATAAAGTAAATTCAAAAATTGAACCCATCttagaaaaatgtgtttattttaagcaaatCACTATAAAAGACCATGACACTAGGGTTGTCATCTGAgctttaaaagtaatacaatctagaagaaaaaaagaatcgAGCTAATTAGTTATGTGTCCTGTATTCTCGTAATTGTGGAATTCCAGTGATCAAATGTAAATTAGATTCGGCCGCACCTGGCCTTAACCAGCTGAGCTGTACGTCAAAATACATAGTGGAATGTAGGCTTACATTTTGGGTTAATCGCAAGACCTTGTCTAAAGACCCAGTACGAGATTTATTATTGCACTTAGCATGTGGATGGAAGCACAAGCATTTCGTATTGCTAGTTCtagctaaaaacaaaaagcaaaccgCTGAACTTCTATAGCTGCGATGTCAATTTAAGCATTTTACGGCACTGCGTGGTGCACTAGATATGTTCTGGCTGCTGTGGTAATTGGAATCAATTAAAAATGGCTTTGACACAGAAACACTCGAGGGTAAACCAGGAACGGCCTATGAATTCAATGATGAAGTGCAGAATGTCGTGGTGCTTTttcatttagtctttgttttgtctttttaatataatcatctccataaacattttcaagcataaaacaaattatacattgcAAACTTTTTTTGGCACTCGCCTGTCTTTCTGTTATTTAGTGAAATCagacaattaaacaatacaatctgACGCATGGTGAAGTTGGGATGTTGAAACCAACAGTCTTTTTGTCCTAGACTTCTAGCTTGAGAATATaactacataaaaacaaaatcctttttcTCTGCTATACCATTAGTAAAATATGTATCCAATGCCTGATTATACttacaaatcacaaaacaagtcacattatatgtgtgtaatttaattttaaattaaatattctaatAAGAGTTGCTGTGTAACTATTCCTTGTACGATGAATAGTTCTAGGATGTAAAGATTGTTGTGTTTGGCTGTTGTTAGTAAGCAATACATTTCATAGCCTAAGCAGTATGTAGAAAAGCACATTACTTTGTggttaagattttttttaataggaaatAGAAAAACGTATTTATCATGTATAGTTTTGCAGGAgagattttatacatttatatacatactgtgtgGGTTGCTGCCATGTATAACAAGCTTTGCTAGACACCCGTTTGTCTTCACTCCCGTGTAGTTGAAGGCATCATCAATTTCATGATCTCTCCACATCAGTTTAGTTTGTTACGCCTTAAACGGCCATATCCAGGAGAGTTATGTTGGTatgaaagtaaataaactgcaaactacagttttttactttattgtttgtGGTATTAGATTTGTTACACAAAAATCTGACATCTAATGTAGATCTCaagtaaagtttattttatacagagaTAGTGTCGCTTGATTTCTTtcaagtttgtttatttgtatttcttatttcagaATAACTTGAGCTTGCCTGATTATGAGAATACAGCAAGAGATTGATCATTTAGGGTAAAATACAGAAACCTTAACCTTAACCAAACTGAATGAATATATGTTAGCAAGTAAAAGCCATGTAACCtagacattatttaaaaaacaaatgacacaaaGGTTTCCTTCAAAACTAAAACTTCACTTCCAAAGATTACATGAAGAATCAGAGAGAGCACAGTCAGCTTACAGAATGGCATAGGAGGTCAGTGTTAGTGTTGCACGATCTTTGACGATTGTCCTTCATGGGACACTTATTTTAGCACAACAGGCCTTCGATATATTCAGATATTACATTATATCTTGGTGTTCACAAGCTGAAGCCATGTTCttgtttatatacatagttTAATTTCTATTATCTGTTACCAAAAAAGAGAAGAGGTGACTCCCAGCATCTGGCAGCATTTTCCCAGATAAATATCTAAGCCCTTCCCATCATGCTTCGGAGCAACAGGCTAATCTCATGTGTATATTAGCATTCTCTTACTCTACCTTTTAGAATGTGGAAAGTCAGCATTTCAGAAGGCAGTGTTTATTGATGAGCTTGTATGATTACTGGTCTAGACATGGGAGAGTTGTATTGCCTTGATTTTTATCCCAATGCATTTTGAGCAGGGGCCCTGTATTCATTTGAAACGCTGTTGTGCTTGGAAATCTGGATCCGATTGTACACCAGGTGATAATTTGGTGACCAGAAAGTAACACCTGCAGCTGTAAAATGGAAATTGCCCCAACcactaatgttttgttttctattgctTGGCCAAATACTGAGGTTGAAATATTTTGATGTCATCCTCTATTCCCAAAATGATGTTTGAGATACACTTGACGTACAAGTGAATGAAAGACTATTGTAAAACTGCATCTGGAAAATCATAGATAACAACTCATTACATTTTTAGGGAGGTGTTTAAAACACTTAGGTAATATTCAGTGTGCATGCATAGTTTCCCACTTAAAGAGAAATATTAGTATAATCCCATTCTTATATTCCAAATCGATTCTCTGCCCTAAGATATTTCCttcttgattatttttttgtttctttgttttgttgttttgttttgctgaaaaaTCAGTTTCCTatcaattaaatcacaatattgGTCTGCTAAAACACTAAGACAAAATCCATGTAGTTCAGTAGGCATTaatctgtcaaaaataaaaaggctgcATACTCTAGATGGTATGTAAGGCAACTATATGAATCCTTCAAAGTAAAAACAAGATATAATGCACAGAATAGCACATAGTTACTATAACAGTGCAAGCAACCCACAACAAGGAGGTGTGGAAGGTGCATGTATGGAAGTATGTCCATTGGTCCCAGTTACTCTCTTGTTCGGAAAAACATTCACTTCTCTGCAGTAAACATGCCACGATTCCTCTCAGAATGCCGATCCTGTTGCTAATTCTTGTTTGTGAGGAATGTGGAtgaaactgctttttttttactaattaaCAAATTCTGTTCAACGTTTTGTCTGCAGTCAggtttatatttgtgtaatgtataaatatttacactttgACTATAGCCAAAGCTTGTAGGTGGGGTcccctttaattaaaaatacaaataaaataatcttgttgtaaaacaaataaacaaataacatataGATAAATATTACCAAACTTTTATATTTCACCCTACCTTAAACAGTTTGGCTTTTACTAAAGAATCTTTTAGAACAGgcgttcccaaaccggtcctggagtcgcccctgccctgctgagttttgttccaaccgagctcttaattacttaattgaaccatatattgcattgttagtacaattaaggattaaattaagcaatttagctggggaaaaaagcagcagggctgtccaggaccggtttggaaACCGCTGTTCTAGAACAGTCAGCAATAGCTCCATGTTGATGTGTTATGTAGCAAAACAGTATGCAATCTTGTTTTCTGttccttcattttgttttttcaacaatataaataatggcAGCTATAAATATTCCACAGATGCAGGATTCCTGGTGAAGTCTTTGAAGAAGaggttttgttgttgatgtctCTTCTTTTACTAAATATGTTGAGAAGGGCTTCTGCAATAAGAAAGAAACTGTATATGCTGCTATTGATTGGTCAATAAATGGCTATATATGTAaattgattgttgttgttttattttatagcagCTACTTAAATCATATTCAACAACATATTCTGAACAtgcttgttttcaatgtttataGCAAATCTAGTTCTTCCACAATGCATATTACTTAGGAAGCTCGGCCATGCTTGtacatttcatatgtattttttgttgcagTAGTGCCTTATGTTTTTTAAcgtgaa
>TU109843
gtttttctttagtGATGTCACAAAATGGCGACAACCATGCTCCTGTGGAATGTATCGTCTCTACGCAGTTCGTAAAAATGTCGTTTTGGTGATATAATCAATATCAAATATTTCGATAGGACAAAGTCAGTACATTGATATATATACCAGTAAATGAGTTGAACGTGAAGAGGAGGAATTAAACGGCCTAATATTAATGCAGCATCTCCCAAAGGCTGCGACGTAGTTTTTAACTTCTGTGCTCCCAGTttggttgtgtttgttgttgtttttccctgtCTTGGTTGCCATCACTTTTTTAACATTGATGGACATGGAGTTTCATGGCGGTGGTGGTGCCGGTGGGGTCTTGGTCAGTGGCAGTAATGTCCCGGCCTTCCTCACGAAACTTTGGACTTTGGTGGAAGATCCAGACACCGACTCGCTTATTTGTTGGAGTCCGggTGGTACCAGCTTTCATGTGTTTGACCAAGGAAGATTTTCCAAAGAGGTGCTGCCCAAATACTTCAAACATAACAACATGGCTAGCTTTGTCCGCCAACTCAATATGTatggGTTCCGCAAAGTTGTTCACATTGAACAGGGTGGTTTAGTGAAGCCAGAGAAAGATGATACTGAATTCCAGCATCCATATTTCGTCCGAGGTCAGGAGCAGTTGCTGGAGAATATTAAAAGGAAGGTAACAAATGTTTCAAATATTAAACACGAGGATCTGAAGCTACGCCAAGATGATATCAGTAAGTTATTGACTGATGTACAGTTTATGAGGGGGAAGCAGGAAACAATGGATTCCAAGCTCATCGCCATGAAGCATGAGAATGAAGCTTTGTGGAGGGAGGTGGCAAGTCTGAGACAGAAGCATGTCCAGCAACAGAAAGTCGTGAATAAGCTCATTCAGTTCTTAATCTCACTGGTGCAATCTAACAGAGTTCTgggaatgaaaaggaaaatgcaagtATCTGGGGATCTTTTCTGTATATGGGTTTTTC

Function

symbol description
hsf1 Enables sequence-specific DNA binding activity. Acts upstream of or within lens development in camera-type eye and response to heat. Predicted to be active in nucleus. Is expressed in brain; head; and otic vesicle. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human HSF1 (heat shock transcription factor 1).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0009408 response to heat biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09414 HSF1; heat shock transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021723 True 7983 mRNA 0.37 13 26899963 26919820
TU109843 False 989 TUCP 0.42 6 26911474 26919844

Neighbor

gene id symbol gene type direction distance location
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding downstream 75665 26805040 ~ 26824298 (-)
AMCG00021716 NA coding downstream 243879 26643754 ~ 26656084 (-)
AMCG00021709 NA coding downstream 333025 26564206 ~ 26566938 (-)
AMCG00021710 NA coding downstream 427748 26440655 ~ 26472215 (-)
AMCG00021701 NA coding downstream 809977 26083778 ~ 26089986 (-)
AMCG00021725 NA coding upstream 26328 26946172 ~ 26946690 (-)
AMCG00021731 brp16,LOC107589436 coding upstream 84637 27004481 ~ 27009904 (-)
AMCG00021732 NA coding upstream 134199 27054043 ~ 27064071 (-)
AMCG00021736 NA coding upstream 276248 27196092 ~ 27202305 (-)
AMCG00021735 LOC105904932,LOC108429636 coding upstream 316730 27236574 ~ 27261351 (-)
G87992 NA non-coding downstream 4627 26892476 ~ 26895336 (-)
G87980 NA non-coding downstream 99248 26798091 ~ 26800715 (-)
G87884 NA non-coding downstream 462070 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 481064 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 504784 26394951 ~ 26395179 (-)
G88095 NA non-coding upstream 489579 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 699976 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 707276 27627120 ~ 27631668 (-)
G88157 NA non-coding upstream 715060 27634904 ~ 27636720 (-)
G88190 NA non-coding upstream 1183486 28103330 ~ 28103666 (-)
AMCG00021719 ndrg1a other downstream 181455 26674078 ~ 26718508 (-)
G87871 NA other downstream 745588 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 794572 26091227 ~ 26105391 (-)
G87806 NA other downstream 991958 25905444 ~ 25908005 (-)
G87674 NA other downstream 1493425 25403650 ~ 25406538 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1861958 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 2149357 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2810233 29730077 ~ 29742808 (-)
G88527 NA other upstream 3417739 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 3958004 30877848 ~ 30888588 (-)

Expression


Co-expression Network