AMCG00021728 (LOC102788509,LOC106570431,LOC106588958)


Basic Information

Item Value
gene id AMCG00021728
gene name LOC102788509,LOC106570431,LOC106588958
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27011922 ~ 27024907 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021728
ATGCCTGTGTCTGTCCCAAAACTGACACCCAAGGACAATGAGGCCCTCCAGGCTTCAGCCCAGTATTTTGGGATGAAGCTGAAGTCAAACCTTGGAGGATCTATAAAGGACCGTCCAGTTTCTTTAAAGAAGTCGTTTACTCCAAAGAGACAGCCTTTAAAATCATGGAAAGAAGGCCTGGGCCCAACAGTTCCAACAGACACAATGTCTCCTCTACCTAAGCCAGCCAACACCAGTCCAAATGCCTGCAACACCTCAGCACAAGCTATGGATCTTGAGGAAGGGCAAGAACCATTTGAAACTATACCAGGCTTTACTCCATCCAAGATGTTCTCACCGGTAGCTTGTACACCAGAGCGATTCACTAAAAAAGCACAGCACTTACAGAAATCCGTAGTCAAAAGATTGTCTTCAGTGGACAAGGGATGGTTAGAGCGATGCCAAGTGTTTGATGAACTGCAAAACACAGAGAAGCCGGCGACGGGCAATTTGTCTTTGGCAGATAGGGAAGGACCTCTTCTTTTGCATGGAGCCAACAAAAACATGGTCCACACCAACCCTTTGGTCAAACCAGCTAACCAGAACACTGCACTCATGGGAGAGAGTATTTCTATGGTCACACAGAGTAGATTACCCTTAGAGGAAAGGCTACAGATCACTAATGGAATATCTGCAGTAGAAAAGGCAGGTTCTGCTCCAGATGGACAGGTTTCCACATCAATGAACAGTGTTAATGGAAAGAATGAAACAATCAGGTCAACAGAGAAAGGAGGTGCTGAAAGAGGATCTGTTCCTGTTACTATGGCATCAAAATCGTCCACCAAGGCCAAAGAGAGACATGTTTCAGAGAAAGAAGTGGCTGACCTGAGTTCAAACCAAGATGGAAATAGTGAAACATTGTCTAATAGGAAAAATACTAGAAAAAGGGTCAGAAAGAGGCAGAGGGAGTCTGACGCTGAAGGTGACGAACCTGCAGAAAGTCTTGAGGAAGGAGCAGccaagaaaagaagaaagaccAAAAAGGTGTCTTCAGAGAAACCCAAGGCCTCACGAGTGAAGAAGAAAGCTAAGCTGTCTGAGGGGGGTAACAACTCTACAGAGGAAATCGGTGGCCTGGAAGAGAAGAAACCAAAGCCAAAGATTCAGACGGAGAACCTTTTGGGAGACGTTGACTTAGAAGATATCAAGGCTATTTCTGCAAGGGTTCAGGGCACTGGTAAACTGTATATGAAGAAGTTCCAACTGAAGGGAGAACGTTTTGGAGGggcagggagaggaggaggaggaggaggaggaggaggaaggtggGGGAGACCGGGACACAGTGGCGACACCTGCTTCAAGTGTGGGGGAACTGGACACTGGGCCCGGGACTGCAAGGGCAGAGCAGCTCCTGCCCCTGTGGTGGAGAGGGAGTCTGGAGAGGAGGACGGCCAAGAGGAGGCCTTTGAACTTCCGACGCTGGAGGAGGTGGCCCGGGCTACCAGCACGCTGCGCTCAGACCCCATCGTCCCCtccagctgcagtcaggagggaGAAGCTCCAGCCAAGGAGGAGGACGACATACTGATGAATGTGATCCGGCCTGACTACGAGAAGCCCGCCCCTCCCTCCCCCATGGAGCCCCTCTACAGTCTTACTGAGGATGGCAAAGTAAAAGATGTGCCCCCAGAAGTGTACGAGGCTCTGAATGACTTTGGCTACAAGTCCTTCCGTCCGGGACAGGAGGTGGCGATCATGAGGATTCTCTCAGGTTTATCCACGTTAGTAGTGCTCTCCACTGGGATGGGGAAGTCTCTGTGCTACCAGCTCCCAGCTTACTTGTATGCGCAGAGGTCAAACAGCATTGCCTTGGTGGTGTCGCCCTTAGTGTCCTTGATGGATGATCAGTTGTCTGGACTCCCTCCCAAGCTTAAAGCTGCCTGTATCCATTCCAACATGTCAAAGAAACAGAGGGAGGCAGCCATTGAAAAGGTGAAAGCAGGAGAGGTCCACgttcttctcctctctcccgaGGCCCTGGTTGGGGGTGGGCATGCGGGGTCTGGCTGCCTGCCCCCGGCCGACCAGCTTCCCCCGGTGGCATTTGCATGTATCGACGAAGCCCACTGCGTGTCTGAGTGGTCTCATAACTTCCGACCTTGCTACCTGAGACTGTGCAAGGTCCTGAGAGATCGGCTGGGTGTGCGTTGTCTGCTGGGTCTGACTGCCACAGCCACCATGGCCACAGCCCTGGACATCGCCAACCACCTGGACATCAGTGATGCGGAGGGCATCGCTGTGCGCTCGGCCGCTGTCCCCCATAACCTGCAGCTCTCTGTGTCCTTGGATCGAGAGAAGGATCAGGCTCTGGTGAATCTGCTGAAGGGGGAGAGGTTCGGCTCTCTGGACTCGGTCATTGTGTACTGCACCCGCAGAGAGGAGACCACCCGGATTGCTGCTCTTCTGCGCACCTGCATGCAGGGGGTGATGCTGCGGGAGTCGGCCAAGCCGCCCAGCTTGGAGACGGAGGAGAACACGCATGGGAAGAGAAAGAAGGCCCTGGCGAAAAAAAAGATCCGGAAGCCCTTGAAATGGATCGCCGAGTCGTACCACGCCGGCCTGTCAGCTTCCCAGCGCCGTAGGGTCCAGAACAACTTCATGTGCGGAGAGCTGCGCATTGTGGTGGCCACAGTGGCCTTCGGGATGGGGCTGGACAAGTCAGATGTGCGCGGCATCATCCACTACAACATGCCCAAGAGCTTCGAGAGCTACGTGCAGGAGATCGGCAGGGCTGGCAGAGATGGAGAGCCGGCCCACTGTCACCTGTTCTTGAATCCAGAGGGTGGAGACCTCCATGAACTCCGTAGGCACATCTTCGCTGACACTGTGGACTACTTCACAGTAAAAAGGCTGGTCAAGAAGGCCTTTCCTCCGTGCAAATGCAGACAGATCCACCAGAAGCAGCAGGACCTCCTAATGATGGGGGAAGTAGATGATATTGAGATGATGGAAGCCATGGACGCCTCTGAAAAGGAGCAACAGCCAGAGCAGCAACAGCCAGAAGAGCAGCGGCAGGAGGAGCAGCAACAGCCGGAAGAGCAGCGGCAGGAGGAGCAGCCAACGACACAAAGCAAGGAAAGAGAAGTAGTCTCCCGAGTGTGCCATACACACGAACGGGCCATTCCCATTCAGGAAACCGTGGAGGCCCTCGACATCACAGAGGAAGGTATAGAGACCTTGCTGTGCTACCTGGAGCTTCATCCCCAGCAGTGGGTCGAGCTCCTGCACCCCACCCTGTCTACTTGCCGTCTGGTCTGTTACAACGGGCCCCAGCAACTCCGCGGCCTCGCCAAAATTTGCCCCCCGGTGGCTGTGGCCCTGGCCAGGATGCGGATGGCAGGAGTCAGTCTGGAgcactgcagctctgtggaTTTTGACGTGGTGGAGTTAGCTGACGCCATGGGCTGGGAACTGCTTCCTGTCAAGAGAGGCCTGAGGCAACTCCAGTGGTACACACAGAgtgCCCCCCTTGGATACAGGGGTACAGGAAAGAGTGGAGTCCTGGTGGAATTCTCGGACCTTTCATTCCACTTCCGTTCGTATGGTGACCTGACCCCCGATGAGCTGGACGGTGTCTGTGAGTTCCTGCACCAGAGAGTGCTGGCTCAAGAGCGGACCCAGCTCTACCAGCTGAAAGCTTGCTTCAATGCCTTTCAGAGTGTGGCGTATCGAAATTGCACCTCCTGCACAGACGAGATGGACGAGGAGAGGAGCCTCAAGCTAAAGGAGTTACTGAAAGACTATTTTGATAAAAAGTTGGATCTAGATCTGAGCAAGAAGTATCAGGAAGATAAAGAGAATGATGAGGAAGATGAGCTCACTACATCTAAGCTCCAAGACTGGGAGAACCAGATCCGTGCTGATATCCGTAGCTTCCTGTCCTGCCACATGGATGAAAAGTTTTCTGGAAGAGCTGTAGCAAGAATTTTCCATGGAATTGGAAGCCCATGTTATCCAGCTCAAATATACGGCAGGGATCGAAGATACTGGAGGAAATATATTCAATTTGATTTCAATGAAATCATCCGTATGGCCACAGAAGAAATTATACGAACAAAGTGAAAACATCAGACTGCTGCTGAGAGAAGACAAAATGAGCTTGAGTTCATACTGAGTTTCAAACGACAACTATTGTTACATCTCTTTAAGATTGTCCATTCTGAATCCAGGATTTGTATTTCAtccaaaaatataaagtttgAGAAATATGAGAAGTGTTTCTCTAAATATGATTGAGGAATTTTGTCCCTAGTTTTAGATTAATTACTTTCTACCCCCTTGTGAATAATTATGAgttgttttgcaaaaataaaatagtatttgtttCACTGATACTGtagtattatttacattatgtagGCAGTGAATGCATATTATGTGTGATGTGATTGTAgatagtttttaatttagtactatacaattatttatattggtAAATACagctattttttgtttgttttggattatat

Function

NR:

description
PREDICTED: ATP-dependent DNA helicase Q4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K10730 RECQL4; ATP-dependent DNA helicase Q4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021728 True 4511 mRNA 0.51 20 27011922 27024907

Neighbor

gene id symbol gene type direction distance location
AMCG00021730 NA coding upstream 12 27010869 ~ 27011910 (+)
AMCG00021729 NA coding upstream 9352 27001117 ~ 27002570 (+)
AMCG00021726 bop1,LOC107693294,LOC107753474,LOC107669991 coding upstream 33023 26954157 ~ 26978899 (+)
AMCG00021722 NA coding upstream 146045 26849878 ~ 26865877 (+)
AMCG00021721 NA coding upstream 167045 26836840 ~ 26844877 (+)
AMCG00021727 NA coding downstream 1240 27026147 ~ 27054066 (+)
AMCG00021733 scrt1,scrt1b,LOC105018847,LOC105904905,LOC107741724,LOC105910659,LOC107587804 coding downstream 96424 27121331 ~ 27123223 (+)
AMCG00021734 NA coding downstream 236932 27261839 ~ 27287320 (+)
AMCG00021737 NA coding downstream 270182 27295089 ~ 27315993 (+)
AMCG00021739 NA coding downstream 306708 27331615 ~ 27332691 (+)
G87993 NA non-coding upstream 105557 26896725 ~ 26906365 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding upstream 194640 26813030 ~ 26817282 (+)
G87961 NA non-coding upstream 201055 26808257 ~ 26810867 (+)
G87942 NA non-coding upstream 274039 26720909 ~ 26737883 (+)
G87939 NA non-coding upstream 298446 26710217 ~ 26713476 (+)
G88024 NA non-coding downstream 32467 27057374 ~ 27057611 (+)
G88025 NA non-coding downstream 35275 27060182 ~ 27060389 (+)
G88026 NA non-coding downstream 36912 27061819 ~ 27062090 (+)
G88027 NA non-coding downstream 38656 27063563 ~ 27063951 (+)
G88043 NA non-coding downstream 113920 27138827 ~ 27139443 (+)
AMCG00021707 NA other upstream 442774 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 814846 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1141727 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1258669 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1639583 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 608008 27632915 ~ 27637084 (+)
G88238 NA other downstream 1753408 28778315 ~ 28778733 (+)
G88276 NA other downstream 2035980 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2239920 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2353668 29378575 ~ 29385325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014433 recql4 coding NC_007130.7 CM002903.2 2752933 ~ 2822372 (-)
grasscarp (Ctenopharyngodon idella) CI01000319_02402969_02417407 RECQL4 coding CI01000319 null 2402847 ~ 2417407 (-)