AMCG00021734


Basic Information

Item Value
gene id AMCG00021734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27261839 ~ 27287320 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021734
GGCAAATAAACCTTTCTTAAATCTCTTGAGACGATGAAACTTCAACTCCCAGCATTCCCGGTTTTCCCATTGAGACAAGTGAACTACATCTCCCATGGTCAACGCGACTTTTCGCCACACTGCCTGTGGAGGATGTCTTGGCAACAGAGAAGGGGTTGGTGAAAGGCTACCCCTTTGAGTAGCCAAGAGACGGGTTGAGCTGCCATCCAGTAAACTTGAGGACAACTTTCATTTATACACCAAGCTTTGAATGCCTCCTCCAGAAAATGGGAGATAAACACGAGAAAGGGCCTGCGAGCCGTAAAAGGAGAACCACCATCTCGGGTGGATCGGGGTCAAGTTTGAGAGCGAACGGTAGCAAGTCTGGGGGAGAAACTATTGATACAAAgtacagcagcagcaataaCAATGCGAGAGGGAAAGAGGAAAAGATACAAGATGCGTCCGCGGTATCGagaaaggagaaggagaagggaaAGCCTGAAAACAACTATGACAGACTCAGTTGCCACAAGCTACAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGCAACTACAGGGGGATACTGAACTGGTGTGTTGTCATGCTGGTCTTGAGCAATGCACGTCTTTTCCTAGAGAACCTAATAAAGTATGGTATATTAGTGGACCCAATCCAAGTGGTTTCACTGTTCTTAAAGGACCCTTATAGCTGGCCAGCTCTGTGCCTTGTAATTGtgtcaaatgtatttatatttgcagCATTGTACACTGAAAGAAGGCTATCAGTGGGCACCTTTTCAGAGAGTGTGGGATCCTTTATCCACTTTGTCAGCCTGTCTACCATCCTGTGTTTCCCAGTTGCTGTCGTCCTAATGGTTAATTCTATGACCCCAGttgGTGCAGTTTTTGCACTTTCAGTCTACACTATCCTCTTCCTCAAGCTGTATTCCTATAAGGATGTGAATAAATGGTGCAGGGAGATCAGGCAGGCCAAGGCCCGCACCCTAGCCCGATCCCAATCCTGTCCAACGGTGCAGAAGTCGAATGGTTCTGCAGTGCAAGCTCATGTGTCCTACCCAGGGAATCTCACACACCGAGATCTGTACTACTTCCTTTTCGCTCCTACCCTCTGCTATGAATTAAATTTCCCTCGCTCTCCTCGGATACGCAAGCGCTTTCTGCTCAGGAGGCTTTTTGAAATGctATTCTTCATACAGTTGTTGGTGGGATTAATACAGCAGtggaTGGTTCCAACTATTCAAAATTCAATGAAGCCATTTAAGgATATGGACTATTCGAGAATGATTGAGCGCCTCTTGAAGCTTGCTGTCCCCAATCACTTAATCTGGCTGATATTTTTCTATTGGTTTTTCCACTCCTCCATGAATTTTGTAGCTGAGCTCATGCAGTTCGGAGACCGGGAGTTCTACAGAGACTGGTGGAACTCTGAAACAGTCACATACTTCTGGCAGAACTGGAATATTCCTGTCCACAAATGGTGTTTACGCCACTTTTACAAACCTATACTGAAGAGAGGCGCTAGTAAATGGGTGGCCCAGACAGCAGTATTCCTGGCTTCAGCTTTCTTTCATGAGTACCTTGTCAGTGTTCCTCTGAAGATGTTCCGGCTGTGGGCGTTCATGGGCATGATGGCTCAGATTCCTCTGGCGTGGTTCGTTGGCCGATTTCTAAGAGGCAACTATGGCAACGCAGCTGTGTGGATCTCCCTCATCATTGGCCAGCCCGTGGCGGTGCTAATGTACGTCCATGACTACTACATCCTGAATTATGAGGAGACCCCGGCTGCAAGCGTTTGACCGTAAGACAGAGCAAACCCCAAGAGGCCTGACAGTTACTGGTTCAAGAATGACAATCccttgtgtgtatatatttttttcttttaaatgaggGGAACAACAAAAGTTTATACATCTTGAAAGAAATTGAGATTTAGAGGGGAAACATGGTACATCCCTATAGTATTACCTGAATACAATGAGGATCTCTTTGGCAACACCAGTAAGAGGGAAATCATTTGCCGTCCAGTATCAAGCTGTCTTTACGAGCAGGATTGTGATTCTGTTCCCTCCATAGGAACTTGCTCACTGTGGTATTGTCTTTACTGATACTCTGCACTTTACTATTGCAGACGCTGGGCtcttaatgtttttgtgtgattGGTAACTTTGAAACACTGCCTAGTCAAAGCAAGATTTCAAGACGTTTTTatgcctttttcatttttttacttaaGAATGACGCTCTCCAGTAGAATCTGATCAATGCAAGTGTCCTCATTGAACGTATCATCTTGgcaatatcttttttttgtttgtattggcTTCTCATGTCAACGGGTCATCTTTGATGCCTTTTAAGATGGCCAGATGTGGTCTTTCAGGGGATTTTATTAAAAACGGTTCTTAGAAATATTAACTGCAAACTAATTCTGCTTTTCATAAATGTGTATTGTGGGTTGGTTTTGAGGAAATTTCTAGTCAATTTTGTGGTGTCCTTTAGTTTCAGTTGAGATCCTCTTAGCAATTAGACTTCAAACTTCAAACTCTGAAGGCAGAGTTTTAGAATAATCTCTGTGTCAGATCTCTAAATTTAAGATGCTGAGTGTTTTGGAAGTATACATTGTGATCATGTCTCATTGAACTTGTTAAGAGTGCTTACACAgtttaaacacatgaaaaagCACCTTATAGACCAGCCACGGTCACagccttttcattttcctaTTATATGGGGAGAATTGAAACATGTGTTCAGTATTCAGTATAGCTCATGAATCTGCTATACTGTAACTCTTAACTTGCcaaataataaagtgaaaaagCATCGTCTACCTTAATTACCTTCATGTTAATATGTACCGCTGTGGAAATATCTGAACAATTTTAAACAAGTACATTTTCTGGCAAACGAAAGTTTCTCAGAAGAGGTTTCCTTCTCggcagcatttttgttttgttttgtctaaatTGTCGATACTGTAACATGTTTGTATTCAATCTAGGCTTTTGGGTATTTACTGCTGCATTAATaatattggtttaaaaaatattgtggaTATACAGTggacaatgttttgatttattctccGCCCCCCAATACTGTACTGAGTATTGTCACTCATGGAGTGTCTGGCAGGGTAGACAGATCTACTCACATGATTTCTTTCAGGTAATGTACAGTATTCAAAGGCATTTATAAGAAAATGTGCATTCAGGGATGCAGATGCTCCAGAGTTACTTTGGATTCTCATCAGAAGACAAGCAGAATGTGTCagtcacataaataaatattttactggtTTCATAAGTGAGATAACATACTGCTATTGTAGTATTTAAAacgtttaatttagttttgaaaaagggattttttttatttgatttttttttatatatatataaaaaaaaatgtttttgttgtaagAATCTACTTTAACCTTCAAGGTACAACTAGTggtacatttaaagaaaatgcataaagGGCCGACAGGGAGGAGACATTTGAATTTCTCCTGTTGATGGATCAGGATGTTCCAGAAAATACctgttttgtgatttgttttgtttttcgtaATGGAAGTGttttgtacatttcaatacttgccgttttatttttcagtgtgtttagCTACCATTGTGTTAGCTAATGtgcttgtaaaataaaagcttGCCTTCTGAATTTTGTTAACATTTCTTTCAATTAGTGTGTCCCTAGCCAATGGAGAAATTTTTCAAATAAAGATAGAGATAGTTTACATGTAATGCACAgtaaacaacttatttaaattaataagtgAATGTTTGCAAGGCCTTTTGTTTCAACCAAATGGGTTTTTCCATTAATGAATTCTCAGCTCATCTGttttagcaaaataaaac

Function

GO: NA

KEGG:

id description
K11155 DGAT1; diacylglycerol O-acyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021734 True 3884 mRNA 0.40 17 27261839 27287320

Neighbor

gene id symbol gene type direction distance location
AMCG00021733 scrt1,scrt1b,LOC105018847,LOC105904905,LOC107741724,LOC105910659,LOC107587804 coding upstream 138616 27121331 ~ 27123223 (+)
AMCG00021727 NA coding upstream 207773 27026147 ~ 27054066 (+)
AMCG00021728 LOC102788509,LOC106570431,LOC106588958 coding upstream 236932 27011922 ~ 27024907 (+)
AMCG00021730 NA coding upstream 249929 27010869 ~ 27011910 (+)
AMCG00021729 NA coding upstream 259269 27001117 ~ 27002570 (+)
AMCG00021737 NA coding downstream 7769 27295089 ~ 27315993 (+)
AMCG00021739 NA coding downstream 44295 27331615 ~ 27332691 (+)
AMCG00021740 NA coding downstream 110249 27397569 ~ 27405275 (+)
AMCG00021741 LOC108429086 coding downstream 225124 27512444 ~ 27526967 (+)
AMCG00021742 NA coding downstream 264765 27552085 ~ 27583265 (+)
G88045 NA non-coding upstream 65969 27195652 ~ 27195870 (+)
G88043 NA non-coding upstream 122396 27138827 ~ 27139443 (+)
G88027 NA non-coding upstream 197888 27063563 ~ 27063951 (+)
G88026 NA non-coding upstream 199749 27061819 ~ 27062090 (+)
G88025 NA non-coding upstream 201450 27060182 ~ 27060389 (+)
G88076 NA non-coding downstream 121539 27408859 ~ 27409687 (+)
G88145 NA non-coding downstream 305310 27592630 ~ 27594570 (+)
G88151 NA non-coding downstream 333036 27620356 ~ 27621880 (+)
G88150 NA non-coding downstream 339732 27627052 ~ 27631654 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding downstream 601238 27888558 ~ 27982127 (+)
AMCG00021707 NA other upstream 692691 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1064763 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1391644 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1508586 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1889500 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 345595 27632915 ~ 27637084 (+)
G88238 NA other downstream 1490995 28778315 ~ 28778733 (+)
G88276 NA other downstream 1773567 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1977507 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2091255 29378575 ~ 29385325 (+)

Expression


Co-expression Network