AMCG00021735 (LOC105904932,LOC108429636)


Basic Information

Item Value
gene id AMCG00021735
gene name LOC105904932,LOC108429636
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27236574 ~ 27261351 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021735
AAAAGACAATACCAGTCAAGCGACACATAATACGATGTCAGAAGGCAGCTTTACTGATTTATACTGTACAACTTTTTCCACCtccttttttaaaaagtattgggcatttaactgaaaacaattgCGATAATATCGTATTTGAAACGGACATGAAGAAGGCAAAGAAACCTCAGCAGAATACTGTACCCCAAGTGCCTGGAAATGGAAACGTAAAGAAACAGGGAGAACAAGAGTCGAGGAAAAGGCAGAAACTGGTGGAGATCCACAAGGCTCTAAACAGCGATCCGGTGGATGTTGAGACCCTGCGGAAAGCCGCAGTGAGTGAAGGTGGCCTCTTGACAGATGAGATCAGACGGAAAGTGTGGCCCAAACTGCTCAGCGTCAATGTGTATGATCTGCCTGCCAAGCCGGGAAAAGATGTCAGGGAAAACCACAAGGATTTCGACCAAGTGCTCCTTGATGTCCGCAGGTCTATGCGACGTTTCCCAAAAGgGATGCGTGCTGACCAGAGGGAGGTCCTGCAGGAACAACTGATTGACATCATCCTGGACGTTCTGAAGAAGAATCCCCAGCTTCATTACTATCAAGGCTACCATGACATTGTTGTCACCTTCTTATTGGTTGTTGGGGAGAGGATGGCAATAGCTATGGTGGAGAAGCTGTCTAATCATCACCTCAGggATTTTATGGACCCCACCATGGACAGCACAAAGcacatattaaattatttgatgcCAATTTTGGAGCAAGTTGATCCAGAACTTCACACTTTCATGCAAAGGGCTGAAGTGGGGACCATCTTTGCGTTGAGTTGGCTGATAACCTGGTATGGTCATGTGCTCTCAGATTTCCGACATGTCCTCAGGCTCTACGACTTCTTCCTGGCCTCCCACCCCTTGATGGCTATTTACTTTGCCGCAGTGATCGTTTTGCACAGAGAAAAGGAAGTGAAAAGCAGTGAGTGTGATATGGCTAGCGTCCACCACCTCCTCTCCCAGATCCCCCAGAATCTCCCTTACGAGGAGCTGATCAGCACCGCACACGAGCTCTTCACATGCTACCCTCCCACACTGCTGGCCAAGAAAGCGGCCCTCCAGCCCCGCAAGAGtatcaCCATCAGTTCTTTCAAAGACTTTCAGATGGCCACCTTCAAGCAGCGGCCCGACACCGTGCTGCGTCGTCAGGTACGGGACAGACCTGCCCTGGAGCTAGCCGTCCCGGAGGAAGTGGCACCGACGGGAACCAGCCAGCTAGTCAAGATGGCCGTGTGGGGCATCTCTGCGACACTAGGTGCTGCTGCGCTGGCGGTGGCACAGACGGCTCTGGACTGGGCCCCCGAGTTTTTACTGCAGCTCTTTTAAACCCCACTGGAAGCAGGAAGAGGGAGACGAGAGACGGTGCCAAATGACATGACATTGTCTAAAATAAGACTACTGTCTTATTTATTCAGTagttttttctacatttttcatGTACTATTAGAAAAGTAGATTTAATTATTGCGACGAAAAGCACTGTCATTGCATTCATGTCAGCGATACAGCCATGCAGATGCACAAATAGCTGAGCTGCAGTGGcggtgggggaggtggggtggggcTTGACTACAAAATGCCATTAGTGCATTTTTGGGTATAAAAAAAAGCCTTGAAATggcaaaagtgtgtgtgtgagagagagagagagagagagagtggagaggGTGTTAAACAGCTAAGCAGTACTTTTATCAAAAATTCTCTctcgtttttttaaatttgtccGGAAGGAAGTAGgcatttttttagtttattaaaaaaaaagtgtctctcTGAAGAAAGAGGTCCTTGTGAGTCTCCCACCATCTCCCCAGTGAAGCGTGCAGAAAGCTGACGCATCACCCGGTATCCTTTGTTGGTTGCGAAGCAGCCTGCACCACTACTGACTCTCAGTCCGAGGTGGCCATCACCGAGATGAGGATCCTCGACTTGTCACAGCAGCTTTTGAGAAGGAGAGGGGTGTCTTGCGGCCAGCGTGTGCTTATCCCTCCTGGCTCCGTGTCAGGAAAGCACAGCGCTTCAAATTCAGTTTCCTAACTGTTTTAAACCTGTTGCCGCTGAGAGAATCCCTTTAGTCAGAGAGCAAGACTTCAATTACTGCTATCAGTCACACCTGATACGGGGATGTCAGGAAACAGATGCTCAGCCTCCCTGAGTATGAGTCTGGAGAGGCCAAGGTGCTGTAAACTCATTTCCCCCCATTACAAAGGAGCATAGCACAGAGAAGgctgtttgattattttttttttacattttatttgactaGTACTTTAACAGACTGCCATGTCCTCACCTTAACCTAAAACACATAATTTTACAACCTGCTGCTTTTGAAGTCTTACAgccttttattaatattttaattttatttgctttaccCATTTATTAGTTTCTTAAAACTAGCTTTGTCCTCCaactggataaaacaaaaacaacttaaaggaagaaacaaaaaacaactgaagtCAAACTCTATTTTGTCGATTTCCGGTCATTCTGAGCGGTCTGGTGTTTTTCCCCCCTACTTTGTAGAAGTTGAACATGACTCAGAGATGCTAGTACCACTACAACTGAAAAGACCTTCCAGATAACATTATACTGCACCCTGACTGATATTTGTGGTTTCTATTAAAGGCACTAAACATATACCTTAATGCCAAAGTGACTGGCAATTTGTGcagaatgattttttttttatattgtggtttgttttccagttcTTGCCAAGATTCACGATGCCATCATAATAATTTGAACCCAAGCCGCTAGTCCCCCTCTTTGCCGGTCAGTGAGCCTTAAGGCCCAGTTTAAACACATCCATTTTGATGTCCTACCATGATAATGTGTGCCATTATCTTGGAATCTACTAAACACGTGTTTGTCAAAGCGAATTAATGTGGGTGACCAGACACAATGATTACTAATCTACCGAAATAAAGGGACGAAgtgcaatacttttttttcatttatgtataCACCTGAatccttattttaaatgtggtcaAGTAGGCAAGTAATAATAGTTGTTCTCTGTTCCTACAGaatgaaaattgattaaaattgaaattaaaatgtaaaccgTTTGTACTTGTTTGATTCCTCACCAATGGTAGATTCCATGTATTCATTAGTTATCTCAAAATTTGATCGTGTCTCCACTCGTTGTTCTGTACCTGTCAGGtttcttttataaaaacatatgcaGATTTCTCATGATCCCCCTTATCAatctatactgtactgtacgagtttgtgtataattttattttgtacaaaaataacttccattgctgttttttttttttt

Function

NR:

description
PREDICTED: TBC1 domain family member 20-like

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021735 True 3344 mRNA 0.44 8 27236574 27261351

Neighbor

gene id symbol gene type direction distance location
AMCG00021736 NA coding downstream 34269 27196092 ~ 27202305 (-)
AMCG00021732 NA coding downstream 172503 27054043 ~ 27064071 (-)
AMCG00021731 brp16,LOC107589436 coding downstream 226670 27004481 ~ 27009904 (-)
AMCG00021725 NA coding downstream 289884 26946172 ~ 26946690 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding downstream 412276 26805040 ~ 26824298 (-)
AMCG00021738 cfap20 coding upstream 25901 27287252 ~ 27291996 (-)
AMCG00021743 NA coding upstream 154919 27416270 ~ 27440262 (-)
AMCG00021744 rplp1 coding upstream 323069 27584420 ~ 27587139 (-)
AMCG00021747 NA coding upstream 377231 27638582 ~ 27640909 (-)
AMCG00021755 NA coding upstream 954471 28215822 ~ 28218715 (-)
G87992 NA non-coding downstream 341238 26892476 ~ 26895336 (-)
G87980 NA non-coding downstream 435859 26798091 ~ 26800715 (-)
G87884 NA non-coding downstream 798681 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 817675 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 841395 26394951 ~ 26395179 (-)
G88095 NA non-coding upstream 148072 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 358469 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 365769 27627120 ~ 27631668 (-)
G88157 NA non-coding upstream 373553 27634904 ~ 27636720 (-)
G88190 NA non-coding upstream 841979 28103330 ~ 28103666 (-)
AMCG00021723 hsf1 other downstream 316730 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 518066 26674078 ~ 26718508 (-)
G87871 NA other downstream 1082199 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 1131183 26091227 ~ 26105391 (-)
G87806 NA other downstream 1328569 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1520451 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 1807850 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2468726 29730077 ~ 29742808 (-)
G88527 NA other upstream 3076232 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 3616497 30877848 ~ 30888588 (-)

Expression


Co-expression Network