AMCG00021736


Basic Information

Item Value
gene id AMCG00021736
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27196092 ~ 27202305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021736
ATGTCACACTGGATTGCAAATACTGATGTGGACCGCAAGCGGTATTGGCAAAGCCAACtgCACAATGGCCGCATGGGCGGCAACAGGAATAGGCGTGGCCCAAACAGGAGACACCTGTATAGTTGGCAGCAGGCCAGGGGCCAGCAGAGGCACCAGGGGAGCACAGGGGGCCGCCAGGACAGCGGCGCCCCTCAGAGGAGATTTATGGCTTATGGAGGGAGGCCAAACCACAAATGGGGAGGCGGTGGCAATGCAGGGGGGCATTGCCCTGGCAGCTGGTACAAAATGACGATCCCCTATGGGGGGAAGCATGAGAAGTCGTGGCTGCGCACCGCCCTGCAGGACCTGTGCACCGTGCTCTTAACCCCTGTACAGtTTCACTACGAGTGGAACAGGGCTGTGTTCTATGTGCAGAATACCACCACAGCCCACGCGCTTCACAACGTGTTACGAAAAATCACCAACACTGAAGGGTACAAGGTATCCGTCCTCATGAAccacgcccccccaccccccaacgcCTTGAAGCCAAAGGACCTGGAGCATCTCAAGcaatGCATGAGTAAACGCTACGATGCCTCCCAGAAAGCTCTGGACCTCAACAGCATTCACACTGACCCAGACCTGGTGTCTCACAATATCGACGTGATTGTGAAGAAGACGGGCGGCATCCAGGCCATCATGAAGATCATCGAGAAGTATCTCCCAGAGCTCCTCTCTCTGAACCTCAGCAACAACAGACTGTACAAGCTGGATGAGGTCTCTGAGCTGGTGAGCAAAACGCCCAACCTGAAGATCCTCAACCTCTCGCACAACCAGcTGAAGTTTGAGAGGGATCTGGACAAGCTCAGGGACTTCAAGCTGGATGAGCTGTGGCTGGAGCACAACCCCGTGTGTGACCACTTTAAAGACCAGCCGTCCTAcatcagTGCCATCAGAAAGAAGCTCCCCAGACTGCTCAGGCTGgATGGTCATGTTCTTCCCCCCACAACCGCACTCCCGGCCTGTAAGGGCAGTTATGTTGCTTCGGAGGAGATTCAGAGTAGGATTCTGCACTTCCTGCAGGAAATCAAAATTCAAAACGAGCCTTATAGgtgtctttctctcttccaGGAGACGTTACTGACCTTCACCGTCAGTGGAGTGTTTAAAGAAGtggacGGGAAGTCTCAGGACACAATGCACGCGTTCTCTCGTGTGTTCATCACTGTCCCTGCAGCAAACTCTGGgctCTATATTCTGAATGATAAGCTGTTTGTTCGGGACGCGACGACGGAGGAGATCAGACGGGCGTTCGCTACTTCAGCCCCCATGCCGTCCAGCAGCGCTGTGCCCACGCTGACTGCTACGCAGCAGGAGATGCTGTCCGTCTTCTCCGTGCAGTCGGGCATGAAGCTGGACTGGTCACAGAAGTACGTACTGCAGGACACTGACCACAGTGGGACATGGACCACTGACAGAGCGTACTGCTGGACACTGACTGCTGACGGCACTGAGCACTGCTCCACTTTGATATTTGCAATAGTGTGTTAA

Function

GO:

id name namespace
GO:0051028 mRNA transport biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021736 True 1533 mRNA 0.55 17 27196092 27202305

Neighbor

gene id symbol gene type direction distance location
AMCG00021732 NA coding downstream 132021 27054043 ~ 27064071 (-)
AMCG00021731 brp16,LOC107589436 coding downstream 186188 27004481 ~ 27009904 (-)
AMCG00021725 NA coding downstream 249402 26946172 ~ 26946690 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding downstream 371794 26805040 ~ 26824298 (-)
AMCG00021716 NA coding downstream 540008 26643754 ~ 26656084 (-)
AMCG00021735 LOC105904932,LOC108429636 coding upstream 34269 27236574 ~ 27261351 (-)
AMCG00021738 cfap20 coding upstream 84947 27287252 ~ 27291996 (-)
AMCG00021743 NA coding upstream 213965 27416270 ~ 27440262 (-)
AMCG00021744 rplp1 coding upstream 382115 27584420 ~ 27587139 (-)
AMCG00021747 NA coding upstream 436277 27638582 ~ 27640909 (-)
G87992 NA non-coding downstream 300756 26892476 ~ 26895336 (-)
G87980 NA non-coding downstream 395377 26798091 ~ 26800715 (-)
G87884 NA non-coding downstream 758199 26432144 ~ 26437893 (-)
G87883 gabbr2 non-coding downstream 777193 26418680 ~ 26418899 (-)
G87882 NA non-coding downstream 800913 26394951 ~ 26395179 (-)
G88095 NA non-coding upstream 207118 27409423 ~ 27409711 (-)
G88153 NA non-coding upstream 417515 27619820 ~ 27620091 (-)
G88154 NA non-coding upstream 424815 27627120 ~ 27631668 (-)
G88157 NA non-coding upstream 432599 27634904 ~ 27636720 (-)
G88190 NA non-coding upstream 901025 28103330 ~ 28103666 (-)
AMCG00021723 hsf1 other downstream 276248 26899963 ~ 26919844 (-)
AMCG00021719 ndrg1a other downstream 477584 26674078 ~ 26718508 (-)
G87871 NA other downstream 1041717 26152105 ~ 26154375 (-)
AMCG00021700 NA other downstream 1090701 26091227 ~ 26105391 (-)
G87806 NA other downstream 1288087 25905444 ~ 25908005 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 1579497 28781802 ~ 28783281 (-)
G88288 ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 other upstream 1866896 29069201 ~ 29071760 (-)
G88405 dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 other upstream 2527772 29730077 ~ 29742808 (-)
G88527 NA other upstream 3135278 30337583 ~ 30424612 (-)
AMCG00021820 NA other upstream 3675543 30877848 ~ 30888588 (-)

Expression


Co-expression Network