AMCG00021737


Basic Information

Item Value
gene id AMCG00021737
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27295089 ~ 27315993 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021737
CTGAGCGCCAGTGTGGAGCCGCAGACACAGAGCCGGCGCCTCCCTCCCAGCACAGGCCAGCGGCCAGCCAAGCGCTCAGGGACAAGggatgcgcagatctgcagctCACACTGAGCACACCGCTTGATCAGAGCAGGGATAGCTCAACAagttgtgtattttgcatttgaaatcgtactgaaatggaaaacagcTGGAGGTGCCTGCGGGGGGTTTAAACATGTCCGAAAGTTGCTCTGTCAGCCCGGGCTGTTGCGCTCAGCGAGTCCTGCTGTTGGCCAGTAAGGGGGAGTGGGTCGCACTGGAACAGACTCTCAAAGCGCTGGACAAGGGAGACCCAGAGCTCTCCCAGCCTGAGGAGGAGTCATGGTTGACCCCGCTGATGATTGCTGTGAAGGAGAATCGGCTGTCCATAGTGGACAGACTGCTGGAGCTTGGAGCAAACCTCACTGATCAAACAAAGGATGGCAGGACAGTTCTGCATGTGGCAGCAGCTCATTCCCGAGATGAAATTGTGAAGTTGCTGGTGAAGAAAGCTGACTCTAACGTGCTGGGAGGGCCAAAGGACCAGCTGCCATTGCACTATGCTGCATCTCGACCCACGGGTGCCCAGAGCGTTATACAGACATTACTCAAGTTTTCCCACAAAGATGCTCGCCTGATACAGGACAAGGAAGGCTGCATTCCTCTGTTTTTAGCAATAGAAGCTGGGAATATAGGAGTTGTCAAGGAATTCCTTGGAGCAATGACAGAGGCCCAGCTCGGAGCTCAGAGGAAGGGGAGTGGTGATGCTGCTCTCCATGTTTGCTGCAGAAGGAAAGACGTGGAGATGGCCAAACTGCTAATGGAATACGGGGCCAGTGTAGATTTTCAAAACGATGAAGGGCAGACTCCTCTTCATGTAGCAGCCTGGGAAGGAGATGAGGCCATGCTGAAATATTTCTACCAGTGCAAAGCCAACCCCAATATAGTAGACAAGATGGACAGATCTCCGTTGCATATAGCAGCAGAACGAGGCCACAGCAACGTTGTGGAAGTACTGACAGAGAAATTCAGATCCAATGTTTTGGCCCGGACCAAGGATGGCAGTACGCTGATGCACATAGCCTCCCACTGTGGCCATCCAGAAACTGCGCTGACATTCCTGAAGAAAGGGGTTCCTCTGCACATGCCGAACAAGACCGGAGCAGTGTGTCTCCATACGGCTGCCAAGAGGGGCCACACTGCCGTGGTGAAGGCCCTGCTGCAGAAAGGGGCCCACGTGGACGCCACAACCAAGGACAGTTACACTGCCCTCCACATCGCCGTGCAGAGCTGCAAGCCGCTGGTGGTGCAGACCCTGCTGGGCTTCGGGGCACAGGTCCAGCTGAAAGGAGGGaagGCCGGGGAGACCCCTCTGCATATTGCTGCCAGGGTGAAGGAGGGCGAGAAAGCGGCGGAGATGCTGCTGAAGAGCGGGGCGGATGTCAACGACGAGCAGGAGAACGGGGAGACGGCCATGCATATTGCAGCTCGCCACGGTAGCCTGAGGATGATGCAAGCTCTGATCGAGGAAGCAGGGGACCTGACCTGGAAGTCTAAGgCAGGGGAGAACCCTTTGCATATTGCAGTGCGCCACTGCCACGCTCATGTTGTTCAGGAGATACTCACCTATCTGGACAGTGAGAGGAGCCCCGGAGAAGCTGTGGCCTGTGTCAGCCAGGACAACCAGGATGGAGAGACACCCTTGCACCTGGCAGctgaaattaagaaagaaatgACACACTGTGAGGGGGAAGACACACGCATCATCAAAATCCTCATGGAGTACGAAGCTGACATCACTGCCGCAACCAAAGTGTGTGGGGAGACTCCCCTGCACTACTGTGCCAGGGTGGGCAACACAGCTGTCCTCCTGGAGATGCTGCAGAACTTCAAATCCAGCCGACTGCAGCAAGCCATCAACAAGCACAGCAAGAATGGCTGGTCCCCCTTGCTGCTGGCCGCAGAGCAAGGCCATACCGAGATTGTCAAGATCCTGCTGCAGAACCACGCTAGGGTTGATGTCTTTGATGAAAATGGCAAGGCTGCCCTCCACCTGGCAGCAGAGAATGGTCATGAGGAGATTGTGGATATCTTGCTGTCACACAAAGCCTTTGTCAACGCCAAAACCAAGCTGGGCATGACGCCTCTCCACTTAGGGGCACAGAATGGGTACAACAAGCTGGTGAGGCTGCTGGTGGAGACACACATGGCCAGCATTGATGCCCTGTCTTTGAGTAAACAGACACCTCTTCACCTTGCAGCCCTCAACGGGCAGTTGGACGTGTGCAACAGTTTGCTGAACATGAAGGCTGATGTCAATGCCACAGACATTCATGGACAGAGCCCCCTGCACCTCGCAGCAGAGAACGACCACTCTGAGGTCGTGAAGCTCTTCCTGAAGCACAGACCTGAGCTGGCTACCCTGGCCAACGTGGAAGGGGCCACCTGTGCCCACATCGCCGCCTCCAAGGGTAGCGTGGCCGTCATCAAGGAGCTGCTCAAATTCAGCAAGGGTGGCATGACCTCGGCGCACAACAAGACGAATGGCTCGAGCCCAGTGCACTTGGCAGCTGCCGGAGGTCACACGGAGGTTGTGAAGGTTTTGCTGGAGGCCGGAGCTTCAGCTGCTGAGGAGAATGCAGAAGGAATGACTTCTATTCATTTAGCTGCCAAGAATGGGCACACGCATGTGCTGGATGTGTTGAAGGAcagcatttcctttaaaattacCAGCACCAAGACAGGCCTGACTGCACTCCATGTGGCGGCTTCCTTTGGCCAGGTGGACTTTGTGCGTGAGATTCTCACTAAGGTGCCCGCCACGATGTGCAGTGAAGCCCCCCGGAGCGCCACCGAGGGACTGCCCAGCCGAGAGCGGCCTGCCGAGtcagGGTTTACCCCCCTCCACCTCGCCGCACAGTCTGGTCATGAAGGCCTGGTACGGCTTCTGCTCAACTACCCCGGAGTGCAGGCCGACGCAGAGACCAGCCTACAGGGCTCGACTCCTCTGCACCTGGCTGCTCAAAATGGCCACACAGCAGTGGTGGGGCTCCTGCTCAGCAAGTCCACCTCCCACCTGCACCTGAAGGACAAGCGGGGCCGCACCTGCCTCCACCTGGCGGCTGCCAGTGGTCACATCGACATGGTCAGGGTGCTGCTGGGCCAGGGGGCTGAGATCAATGACACAGACAAGAACGGCTGGACGCCCCTGCACTATGCAGCAAAGTCTGGTTCCCTGGAGATGGTGCGCTTCCTGGTGGAGAGCGGAGCCTCGGCCCGGCTGGAGTGTAAGGAGGGCAGGACGCCCATTCAGTACGCCGCTGAGGAGAACCACCAGGACACCGTCAGCTTCCTGCTCCGGAGAAACAACAACACCCTCAAACTGGTGGAGGACAGGAAGtttatttttgacCTAATGGTGTGCAGCAAGTTGAATAACAACACTGTGATCGAGGACTTTGTGCTGCACTCCCCTGCACCTCTGGACACAGCAGTCAAACTCTCGCGCGCCTTTGGCCTGACTGCGCTGAAGGAGAAGGAGCGCTCCATGGAGCTCCTGAATGCAGCCAAATACTGCGAGGGCATGGCCACAGAGCTCCTCACTGTCGCATCGGGGGGCAAGAGCGCCGGCTACATCCTGCGGGCACTGGATCAGCGCAACACAACCATGCTAGACTGCCTGATTGAGGGCCAGCAGAAGGACGTGGTGGCCCACCCCGCTGTGCAGAAATACCTTACAGAGGTGTGGTACGGGAGTCTTAAGTGGGCATCCTGGAAGATAGTCCTCCTGTTCTTCTGCCTCCTGGTCTGTCCACCTCTCTGGTTGCTCTTCTCCCTGCCACTGAAGCACAAGTTCAACAAGATCCCCATCATGAAGTTCATGAGCCACCTGGTGTCCCACATCTTCCTGCTGGTGCTCTTCATTCTCACCATCGTCTACCCCCCAGTCAACCCCATCTATCTGGGCAATCTGCTGCCTGCCTGGAACGAGTGGCTCCTTCTCGCCTGGCTTTCAGGGATGCTGGTGTCTGAGCTGACGCACCCAGGCGAGCGGGCCGGTCTCGCATGGATCCGAGTCCTAGTCCTGGGATTCTCGGCTGTGGCTTTCTTCTGTCACTTGCTGGCTTTTGCCTTCCACTCCCCAGACCATTTTCACTGTCTTTTTGCCCGCAACATCTTCTTAGCTGTAGCCATGACACTCAGTTTTGTGCAGTTCCTGGAGTTCCTGACCTTTCACCACCTGTTTGGTCCCTGGGCTATAATCATCAGGGACCTCATTAAAGACCTTGCCAGGTTTGCAGTCATCCTGGTTCTCTTCCACACTGCATTCACCATGAATCTCTGCGCGGTCTACCAGCCAGTCTACCCAGTGGATTTCTCGTCGGGCAATGGAACTGCAGATGTCAATGGCACAAAGATACAAACCCCCTTGGAGATATCTATCAAGCTGTTCTTCGCCCTCTTTGGGCTGATAGATCCCGACTCAATGCCATCCCTCCATCGGTCGCCCGCTTTCACGGGTGTCATCACACACTTTGTGTTTGGAATCTACTTGGTGGTGACAGTGATCGTGCTGGTCAATCTGCTGATCGCCATGATGAGCGACACATATCAGCGCATCCAGGCACAGTCTGATACCGAGTGGAAGTTCGGCAGGGCAGTCCTAATCCGGGACATGAATCGGAAATCTGGCACGCCATCCCCTTTCAACCTCTTCACCAACCTCTTTTTCTACATCAAGATGCTCTGCAAACACGGAGGAAAGATCTGCTCGTCTgaaggcagagagctgatgaCAAATGAGGAGGACCTGGAAGCCATCTCAGACACCCGCTCCCTGGACCTGCTGGCTCACACATCTGTCGGCTGGATGAGAACCAACAAGAGGAGCCAGATCTCCCCAGAGGGCACGTACACCCTTCATCgcGGCTTTATCCTGCCCTCCAGACAGAGTGGGCTTGTGCACATAGATGAAGTGACTGACTGGCAGGTGGTGGCTCTTCGATACCTGGCCCTGAAAGGTCAAACTGATGGAACACTGCTGGAGAAAGAATCCTCTCCCAATATGAAACCCACTGTGGTGCGTTTAAAAATTTCCACCGacacaaatatttcagattgcaTCTCACGACCAGAATGATGCTTAATGTTTCAGTGTTATGTTATCTCTCATCTCTGCCTTTCATGCAGACAGCCCTGCAATCTGTATGATATAAGCATACTTGGAAGTCCAAAATTAGGCCTTCCTGTCAGGACAAACCTTCTTGCCAACACCTTACGAGACCCAGTCTGAGGCTGTCAGTACGTCCTGTGATTTTTAGTAATGGCACAAAACGAAATAGAAGAGGAAAGCCACTGTACTGCCTACCAGTGTTGCAAGCTCATTTCCACAGCTCTTCAATGCTTATTAAGAAGCTGATAATGTATATTAGTGTAACCTTTGCAAAGCATCAACAGGAAACTCAAGGGTGCTGATAAGTTTCCTGTACATCAAATAGTGGATGTCAAATCGAAGGGGGGGTTTGGTTATGTAGTGTtggttatgtatgtatttaacacTTAAATCTGAAGATAATTCTGAATATTCTTTACCCTGTATTATTTAGAACACTGTCACTCACTGACTCACTATGCTATACACATTTCTCTAACAGGAAAAGATATGTAGCATTCgcttatatattgtattttctgttccCACTTTACTTCCTTTAGTCGATGTAGCTTATTTGCTCTAAGGGATGCCAATGTAATCATTCGATCGGTTCTACACGGTGCTCGAGATGTGGTCTGTTGAATCAGGTCACATGACTTATCTTCTGTTTAAGTTTGTTTTGCTGAGCTGTGCATTAGGATATTTATTATCCCTGCTCATTCTCCTTCCCACCTGTACTGTGTTTGTTAAATATGTCTGTGACTTAGCTGCCATTATGACCACAGACAATTTTTTTATGCCTTTTGAGCACTTTTCTCAATAATACAGACATTTGAGTCATCATGACAGGTCATGTGACCACCTCCAACCCTGAAGAATGACATCTCATTACTTACATcttcattttgtaaacataCGCCATTTGGCCtcacattgtgtttgtttagaaGTGCAAAGCTGAATGATGTACATTTTGTAGTAATAAAGTGCATTAtccttcttaataataaaaaagtaattgtatatttaa

Function

GO:

id name namespace
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021737 True 6209 mRNA 0.53 28 27295089 27315993

Neighbor

gene id symbol gene type direction distance location
AMCG00021734 NA coding upstream 7769 27261839 ~ 27287320 (+)
AMCG00021733 scrt1,scrt1b,LOC105018847,LOC105904905,LOC107741724,LOC105910659,LOC107587804 coding upstream 171866 27121331 ~ 27123223 (+)
AMCG00021727 NA coding upstream 241023 27026147 ~ 27054066 (+)
AMCG00021728 LOC102788509,LOC106570431,LOC106588958 coding upstream 270182 27011922 ~ 27024907 (+)
AMCG00021730 NA coding upstream 283179 27010869 ~ 27011910 (+)
AMCG00021739 NA coding downstream 15622 27331615 ~ 27332691 (+)
AMCG00021740 NA coding downstream 81576 27397569 ~ 27405275 (+)
AMCG00021741 LOC108429086 coding downstream 196451 27512444 ~ 27526967 (+)
AMCG00021742 NA coding downstream 236092 27552085 ~ 27583265 (+)
AMCG00021746 ago2,LOC107591597 coding downstream 296768 27612761 ~ 27620292 (+)
G88045 NA non-coding upstream 99219 27195652 ~ 27195870 (+)
G88043 NA non-coding upstream 155646 27138827 ~ 27139443 (+)
G88027 NA non-coding upstream 231138 27063563 ~ 27063951 (+)
G88026 NA non-coding upstream 232999 27061819 ~ 27062090 (+)
G88025 NA non-coding upstream 234700 27060182 ~ 27060389 (+)
G88076 NA non-coding downstream 92866 27408859 ~ 27409687 (+)
G88145 NA non-coding downstream 276637 27592630 ~ 27594570 (+)
G88151 NA non-coding downstream 304363 27620356 ~ 27621880 (+)
G88150 NA non-coding downstream 311059 27627052 ~ 27631654 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding downstream 572565 27888558 ~ 27982127 (+)
AMCG00021707 NA other upstream 725941 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1098013 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1424894 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1541836 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1922750 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 316922 27632915 ~ 27637084 (+)
G88238 NA other downstream 1462322 28778315 ~ 28778733 (+)
G88276 NA other downstream 1744894 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1948834 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2062582 29378575 ~ 29385325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013737 CABZ01073736.1 coding NC_007130.7 CM002903.2 1465004 ~ 1479740 (+)
grasscarp (Ctenopharyngodon idella) CI01000319_01309309_01328476 TRPN1 coding CI01000319 null 1309309 ~ 1329734 (+)