Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021738 |
| gene name | cfap20 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 27287252 ~ 27291996 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| cfap20 | Involved in several processes, including regulation of heart looping; regulation of somitogenesis; and specification of axis polarity. Predicted to be located in centriole and cilium. Predicted to be active in ciliary basal body and motile cilium. Is expressed in Kupffer's vesicle; neural tube; pronephric duct; and spinal cord. Orthologous to human CFAP20 (cilia and flagella associated protein 20). |
| description |
|---|
| cilia- and flagella-associated protein 20 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021738 | True | 1124 | mRNA | 0.42 | 7 | 27287252 | 27291996 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021735 | LOC105904932,LOC108429636 | coding | downstream | 25901 | 27236574 ~ 27261351 (-) |
| AMCG00021736 | NA | coding | downstream | 84947 | 27196092 ~ 27202305 (-) |
| AMCG00021732 | NA | coding | downstream | 223181 | 27054043 ~ 27064071 (-) |
| AMCG00021731 | brp16,LOC107589436 | coding | downstream | 277348 | 27004481 ~ 27009904 (-) |
| AMCG00021725 | NA | coding | downstream | 340562 | 26946172 ~ 26946690 (-) |
| AMCG00021743 | NA | coding | upstream | 124274 | 27416270 ~ 27440262 (-) |
| AMCG00021744 | rplp1 | coding | upstream | 292424 | 27584420 ~ 27587139 (-) |
| AMCG00021747 | NA | coding | upstream | 346586 | 27638582 ~ 27640909 (-) |
| AMCG00021755 | NA | coding | upstream | 923826 | 28215822 ~ 28218715 (-) |
| AMCG00021756 | NA | coding | upstream | 942644 | 28234640 ~ 28239140 (-) |
| G87992 | NA | non-coding | downstream | 391916 | 26892476 ~ 26895336 (-) |
| G87980 | NA | non-coding | downstream | 486537 | 26798091 ~ 26800715 (-) |
| G87884 | NA | non-coding | downstream | 849359 | 26432144 ~ 26437893 (-) |
| G87883 | gabbr2 | non-coding | downstream | 868353 | 26418680 ~ 26418899 (-) |
| G87882 | NA | non-coding | downstream | 892073 | 26394951 ~ 26395179 (-) |
| G88095 | NA | non-coding | upstream | 117427 | 27409423 ~ 27409711 (-) |
| G88153 | NA | non-coding | upstream | 327824 | 27619820 ~ 27620091 (-) |
| G88154 | NA | non-coding | upstream | 335124 | 27627120 ~ 27631668 (-) |
| G88157 | NA | non-coding | upstream | 342908 | 27634904 ~ 27636720 (-) |
| G88190 | NA | non-coding | upstream | 811334 | 28103330 ~ 28103666 (-) |
| AMCG00021723 | hsf1 | other | downstream | 367408 | 26899963 ~ 26919844 (-) |
| AMCG00021719 | ndrg1a | other | downstream | 568744 | 26674078 ~ 26718508 (-) |
| G87871 | NA | other | downstream | 1132877 | 26152105 ~ 26154375 (-) |
| AMCG00021700 | NA | other | downstream | 1181861 | 26091227 ~ 26105391 (-) |
| G87806 | NA | other | downstream | 1379247 | 25905444 ~ 25908005 (-) |
| G88242 | LOC106595015,LOC106598893,LOC106597821 | other | upstream | 1489806 | 28781802 ~ 28783281 (-) |
| G88288 | ctdp1,LOC107745039,LOC107698650,LOC107748359,LOC107672848 | other | upstream | 1777205 | 29069201 ~ 29071760 (-) |
| G88405 | dtbp1,dtnbp1,LOC106596829,LOC106606149,LOC106596393 | other | upstream | 2438081 | 29730077 ~ 29742808 (-) |
| G88527 | NA | other | upstream | 3045587 | 30337583 ~ 30424612 (-) |
| AMCG00021820 | NA | other | upstream | 3585852 | 30877848 ~ 30888588 (-) |
