AMCG00021745


Basic Information

Item Value
gene id AMCG00021745
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27632915 ~ 27637084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021745
TGGCGAgagtgaatgaataaataaatgtatgtatataattcaTGATGTGTCTTTGTATGCTAGGAAAGTAGGCTAGAAAAATTGAGTTAATCTAACCGAgcgaaaaaataaaatgtcggCATATAAACGGTGCTTTGCAAGTTCCCTTTAATTCATTCCATCAGCGTGTCAGACTTTCCAATAGCTCATCTGCGCTCGTATTGTAGCAACTGCTGCTCACCAAACAGCCTTCACATTGCTTTGGGACATCCTTTGAAGTGTGTTTCACTGGTGTTCTGAATGTGGACCTGGAAATTGACcgggactgggactgggactggggCTCAGGACTCCATGAATTTCTCCACAGTTTCCCTGCGGACAGCCCTTTTGTGACAGAGACCCCGGGGACGGCAGTGAACTGCTCCCAGCGCATCTGGCTTCCCCCTTCATCCCCCATTTGCTGGGAGAACATTGCAGGGCCGGAGGAATTTGAGCAAACTCGACTGCTGGTGCTGCAGAACCGGGCGGCCCTGAGAGCAGTAACAGAGGGCAGTGGAGTGGGGGAGAGAGGCCCGTCCTACAATCAACAGGCCAAAGATGAAGTCCAGGGCATTCGGGACAATCACCTCAATATCGTGCAGACAGCTGAGACCATACAGAAGGTTTTTCAGGGTCTGGAAGAGAAGCGGAAGGAGAGCACAGAGCCATCGGCCTTTTCCAGTTTAAAGCAGCGGATCAGCACGACAAAGGATTCAATACAAGGCAGAGAGCACCTGGCAGATTTGCTGGAGAGACAGCTAGCCCGCCTGGAGGGGTCTTTACACATCTTGCAGCTCAGGCTAGGAAAGCTACTGGCACGATGAATGGGACCGGCCTGAAACAACTCCCTCGCTCCAGATAATGCATGTAAAGCAGACGCCAGCTCATACACTTCACATGCATGCCTGccaaacttaaattaaatcctGTACTCCAAGgaaaagcaagaaacaaaatggaattACATACTACATTCCAGCTCAAGAAACTTCTTTATGTCAGGATTTTGTCCTTGCATGACTATAGACATAGATTACATTCCCCAGCTACACAATGTCAGTAGTAGTTTTAAGGGGAACTACTTAGTTAATATCAATAACATCTATTTTTATACTCATAGCTTGCTGATTTATGCCAGTACTTTAATCAATAATTCTAAGATTTTACTATATGAAATGATAGCTTATAATTTACTAAACTGTGATTAGTATGGCAGAAtctttatatgttatatatggGTGTGATCTGTGGGAAACTCGtgatgctttgaaatgtaattttccgATGTATTCTTTGCCTCAACTTCAAAAAgagttgtttttattagttgGACTTTTTCACTTAGAattttactttgtgaatattaatatatgatgCCAGATAAactaacataataaataaaatgtgttacaaaaacCAATGCCTAGTGGAAATTAAAAATCCCCCACACAATATTGTATTGAAGAATaaagtatgaaaacaaaattattggactgtttagaaaaacattttttttatatgaaactaAATTTTACAAACATATTTGGAAAATGATAGTAAACAGGATGTGGTATGCAAGTGTGTTACCAAAACTACCAAGTGTAACAAATTACTGCCCCAGACTGTGTCACtcttataatacaaaataaagtagaaCTTAAAATAAGTCAACCTATTAATTCCATTCAAATTATGCCTGTGTAGCTTTCCATAAATCTGGGTAATTGCATGTTGTTGAAACAAGTCTCAAAGATACCTTTTAGGTAGgag
>TU110028
CCGGGTCACTTGAGCTGACAAACACTATTGAAAGCACTTCTGGCGAgagtgaatgaataaataaatgtatgtatataattcaTGATGTGTCTTTGTATGCTAGGAAAGTAGGCTAGAAAAATTGAGTTAATCTAACCGAgcgaaaaaataaaatgtcggCATATAAACGGTGCTTTGCAAGTTCCCTTTAATTCATTCCATCAGCGTGTCAGACTTTCCAATAGCTCATCTGCGCTCGTATTGTAGCAACTGCTGCTCACCAAACAGCCTTCACATTGCTTTGGGACATCCTTTGAAGTTTCCCTGCGGACAGCCCTTTTGTGACAGAGACCCCGGGGACGGCAGTGAACTGCTCCCAGCGCATCTGGCTTCCCCCTTCATCCCCCATTTGCTGGGAGAACATTGCAGGGCCGGAGGAATTTGAGCAAACTCGACTGCTGGTGCTGCAGAACCGGGCGGCCCTGAGAGCAGTAACAGAGGGCAGTGGAGTGGGGGAGAGAGGCCCGTCCTACAATCAACAGGCCAAAGATGAAGTCCAGGGCATTCGGGACAATCACCTCAATATCGTGCAGACAGCTGAGACCATACAGAAGGTTTTTCAGGGTCTGGAAGAGAAGCGGAAGGAGAGCACAGAGCCATCGGCCTTTTCCAGTTTAAAGCAGCGGATCAGCACGACAAAGGATTCAATACAAGGCAGAGAGCACCTGGCAGATTTGCTGGAGAGACAGCTAGCCCGCCTGGAGGGGTCTTTACACATCTTGCAGCTCAGGCTAGGAAAGCTACTGGCACGATGAATGGGACCGGCCTGAAACAACTCCCTCGCTCCAGATAATGCATGTAAAGCAGACGCCAGCTCATACACTTCACATGCATGCCTGccaaacttaaattaaatcctGTACTCCAAGgaaaagcaagaaacaaaatggaattACATACTACATTCCAGCTCAAGAAACTTCTTTATGTCAGGATTTTGTCCTTGCATGACTATAGACATAGATTACATTCCCCAGCTACACAATGTCAGTAGTAGTTTTAAGGGGAACTACTTAGTTAATATCAATAACATCTATTTTTATACTCATAGCTTGCTGATTTATGCCAGTACTTTAATCAATAATTCTAAGATTTTACTATATGAAATGATAGCTTATAATTTACTAAACTGTGATTAGTATGGCAGAAtctttatatgttatatatggGTGTGATCTGTGGGAAACTCGtgatgctttgaaatgtaattttccgATGTATTCTTTGCCTCAACTTCAAAAAgagttgtttttattagttgGACTTTTTCACTTAGAattttactttgtgaatattaatatatgatgCCAGATAAactaacataataaataaaatgtgttacaaaaacCAATGCCTAGTGGAAATTAAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021745 True 1791 mRNA 0.41 3 27632955 27637084
TU110028 False 1412 lncRNA 0.42 3 27632915 27636756

Neighbor

gene id symbol gene type direction distance location
AMCG00021746 ago2,LOC107591597 coding upstream 12623 27612761 ~ 27620292 (+)
AMCG00021742 NA coding upstream 49650 27552085 ~ 27583265 (+)
AMCG00021741 LOC108429086 coding upstream 105948 27512444 ~ 27526967 (+)
AMCG00021740 NA coding upstream 227640 27397569 ~ 27405275 (+)
AMCG00021739 NA coding upstream 300224 27331615 ~ 27332691 (+)
AMCG00021748 trappc9,si:dkey-218f9.10,LOC107681624 coding downstream 6200 27643284 ~ 27680343 (+)
AMCG00021749 LOC106570238,LOC102307979,LOC102294850 coding downstream 90709 27727793 ~ 27773527 (+)
AMCG00021750 trappc9 coding downstream 179999 27817083 ~ 27862355 (+)
AMCG00021751 si:dkey-218f9.10,trappc9,LOC107669949 coding downstream 229051 27866135 ~ 27980501 (+)
AMCG00021752 kcnk9,LOC106588605,LOC106570237 coding downstream 343881 27980965 ~ 28033662 (+)
G88150 NA non-coding upstream 1261 27627052 ~ 27631654 (+)
G88151 NA non-coding upstream 11035 27620356 ~ 27621880 (+)
G88145 NA non-coding upstream 38345 27592630 ~ 27594570 (+)
G88076 NA non-coding upstream 223228 27408859 ~ 27409687 (+)
G88045 NA non-coding upstream 437045 27195652 ~ 27195870 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding downstream 251474 27888558 ~ 27982127 (+)
G88225 NA non-coding downstream 1060794 28697878 ~ 28698085 (+)
G88232 NA non-coding downstream 1137787 28774871 ~ 28775193 (+)
G88237 NA non-coding downstream 1193822 28830906 ~ 28831323 (+)
G88248 LOC101154678 non-coding downstream 1265314 28902398 ~ 28902614 (+)
AMCG00021707 NA other upstream 1063767 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 1435839 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 1762720 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1879662 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 2260576 25276776 ~ 25372339 (+)
G88238 NA other downstream 1141231 28778315 ~ 28778733 (+)
G88276 NA other downstream 1423803 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 1627743 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 1741491 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 2630318 30267402 ~ 30407772 (+)

Expression


Co-expression Network